Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0613
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 31 0.18
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.24
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 0.98
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 28 1.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 4.0
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.0
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 26 5.2
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 5.2
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 26 5.2
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 26 5.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.1
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 30.7 bits (66), Expect = 0.18
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = -2
Query: 195 PPVLRL--RSLGVLPPAPRASDLDPIPYSIC--STCQVPSGAPKRIAPCQPPAPP 43
PPVL + RSL PP P P+ S + P ++P +PP PP
Sbjct: 256 PPVLNIGDRSLETPPPIPSPRPPQPVAVEAIQQSRAVISQQLPLHVSPRKPPKPP 310
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.24
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -2
Query: 195 PPVLRLRSLGV--LPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
PP R + G LPP R++ P P S ST + P A PPAPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Score = 29.9 bits (64), Expect = 0.32
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 150 PRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
P ++ PIP SI S+ + P P AP PP PP
Sbjct: 224 PTSTSAPPIPPSIPSS-RPPERVPSLSAPAPPPIPP 258
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -2
Query: 195 PPVLRLRSLGVLPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAP 46
PP L + + P P A P+P + + +P AP AP PAP
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP---APPPAPAP 482
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 0.98
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = -2
Query: 195 PPVLRLRSLGVLPPAPRASDLDPIPY-SICST-CQVPSGAPKRIAP--CQPPAPPDIG 34
PPV + S+ V PP P S P+P S+ + VPSGAP P PP P G
Sbjct: 1102 PPVPK-PSVAV-PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSG 1157
Score = 26.2 bits (55), Expect = 4.0
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Frame = -2
Query: 159 PPAPRASDLDPIPYSICSTCQV--PSGAPKRIAP--CQPPAP-PDIGI 31
PP P S P+P + V PSGAP P PP P P GI
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -2
Query: 153 APRASDLDPIPYSICSTCQVPSGAPKRIAPCQ-PPAP 46
AP A P P S + PSGAP AP PP P
Sbjct: 1059 APSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095
Score = 25.0 bits (52), Expect = 9.1
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -2
Query: 159 PPAPRASDLDPIPYSICSTCQVP---SGAPKRIAPCQPPAP 46
PP P S P+P ST VP SGAP AP PAP
Sbjct: 1032 PPIPVPSTAPPVPIPT-STPPVPKSSSGAPS--APPPVPAP 1069
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -1
Query: 337 ICNFFSILKIVYEFLQLTVQNTNLLIIITKNW 242
+C ++ +L +FL L +NLL+++TK++
Sbjct: 130 LCRYYGVLFHFLDFLTLRPYISNLLVLLTKHY 161
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 4.0
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = -1
Query: 208 NGLVSSCFTAPISWSTASSPSGVRP*SNSIFHL*YLSSSFRSAKTDRSLSATSSS 44
NG++ + ++ ST SS S P S+S SSS S+ + S S++SSS
Sbjct: 120 NGVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSS 174
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 4.0
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = -1
Query: 196 SSCFTAPISWSTASSPSGVRP*SNSIFHL*YLSSSFRSAKTDRSLSAT-SSSRYWYLSFF 20
SS ++ S S++SS S + S+S SSS S+K+ S S++ SSS++ SF
Sbjct: 168 SSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFI 227
Query: 19 TGAT 8
T T
Sbjct: 228 TSTT 231
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 9 VAPVKKLRYQYLEELVADRERSVLALRK-ELDKYYKW 116
++ V+K+ + ++ E+S+L L E+DKY++W
Sbjct: 374 LSQVQKINEKEKDKFYEIDEQSILTLNNSEMDKYFQW 410
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 5.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 139 GRPRGWRQYSKRSE 180
GRP GWR+Y ++ E
Sbjct: 242 GRPTGWRKYPEKEE 255
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 63 RERSVLALRKELDKYYKWNMELDQGRTPE 149
+ ++VLA K YK N++L+ G+TP+
Sbjct: 322 KNKAVLARLNPYAKAYKANVKLNTGKTPK 350
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 231 KSYNQFLVIIINKLVFCTVSCRNSYTIFRIEKKL 332
K +NQ I ++L+ C V R+ YT E+KL
Sbjct: 452 KEWNQLYSEIPSRLIRCEVEDRSIYTTTDAEQKL 485
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -2
Query: 159 PPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPPDI 37
PP P + + P P + VP AP P PP PP +
Sbjct: 732 PPPPPPAVIVPTPAP--APIPVPPPAPIMGGPPPPPPPPGV 770
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,686
Number of Sequences: 5004
Number of extensions: 45088
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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