Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0613
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 32 0.33
10_06_0179 - 11508235-11508245,11508555-11508942 31 1.0
12_01_1113 - 11888691-11888900,11891794-11892243,11892274-118929... 30 1.3
12_01_0688 + 5900110-5900563,5901061-5901164,5901240-5901329 29 3.1
11_01_0133 + 1121392-1122731,1123417-1123858 29 3.1
04_03_0969 + 21331989-21332674,21333090-21333194,21333269-213333... 29 3.1
01_03_0150 + 13220224-13220468,13221903-13222124,13222164-132223... 29 3.1
04_01_0034 - 401208-402923 29 4.1
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426... 29 4.1
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 5.4
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 5.4
05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976... 28 5.4
02_01_0360 - 2594534-2594601,2594778-2594829,2594915-2595029,259... 28 5.4
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 7.1
10_08_1037 - 22477358-22478752 28 7.1
10_05_0008 + 7791462-7791611,7792378-7792833 28 7.1
09_04_0321 - 16664316-16664939,16665369-16666262 28 7.1
07_01_0543 + 4008439-4008808,4009209-4009274,4009409-4009584 28 7.1
06_01_0466 + 3313174-3313305,3313404-3313483,3313582-3313726,331... 28 7.1
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 28 7.1
03_02_0283 - 7078754-7078856,7079358-7079431,7079995-7080090,708... 28 7.1
12_02_0305 - 17235832-17236379,17237345-17237444 27 9.4
11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786 27 9.4
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 27 9.4
05_05_0387 + 24577448-24577638,24580375-24580767,24581078-245812... 27 9.4
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 27 9.4
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = -2
Query: 168 GVLPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPPDIG 34
G PP P D+ P P S S SG PC P P G
Sbjct: 377 GYYPPTPSVGDVPPSPASGTSPSTPGSGGYSPSTPCSAPPSPSSG 421
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -2
Query: 159 PPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPPDIG 34
PP P D+ P P S S G+P PC P P G
Sbjct: 329 PPTPSIGDVPPSPSSDTSPTTPGGGSPS--TPCDTPPSPSSG 368
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -2
Query: 168 GVLPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQ-PPAP 46
G PPAP ++ P P S S G PC PP+P
Sbjct: 455 GNYPPAPTIGNVPPSPSSGTSPSTPGGGCSSSPTPCDAPPSP 496
>10_06_0179 - 11508235-11508245,11508555-11508942
Length = 132
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 162 LPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
LPP P+ + L P P + T + AP + PPAPP
Sbjct: 36 LPPPPKMAPLPPPPAAKAPT----ASAPSPVTAASPPAPP 71
>12_01_1113 -
11888691-11888900,11891794-11892243,11892274-11892950,
11893396-11893957,11894121-11894207
Length = 661
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = -3
Query: 167 EYCLQPLGRPTLIQFHIPFVVLVKFLPERQNG--SLPV---SHQLLQILVSELLHGRDI 6
E L+ G PT++ H PF+ LV LP R SLP+ S QL ++V L H D+
Sbjct: 436 EVVLRNQGPPTVLLVHAPFISLV--LPRRNVAFDSLPLVYHSSQLPLVVVQPLGHDEDM 492
>12_01_0688 + 5900110-5900563,5901061-5901164,5901240-5901329
Length = 215
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 33 YQYLEELVADRERSVLALRKELDKYYKWNMELDQGR 140
+++ LV++ + VL RKE+DKY K + +D R
Sbjct: 82 WEFPSVLVSEEKTDVLNRRKEMDKYLKQVLSIDVKR 117
>11_01_0133 + 1121392-1122731,1123417-1123858
Length = 593
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = -2
Query: 186 LRLRSLGVLPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
LRLRSL PAP P + P P +A PP PP
Sbjct: 122 LRLRSLLTSDPAPPPPPPPSHPALLPPDATAPPPPPTSVAALPPPPPP 169
>04_03_0969 +
21331989-21332674,21333090-21333194,21333269-21333391,
21333458-21333628,21333710-21333839,21333926-21334135,
21334700-21334855
Length = 526
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Frame = -2
Query: 192 PVLRLRSLGVLP--PAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
PVL L + P P D+ +P + P P ++ PP PP
Sbjct: 58 PVLHLATAVAPPKHPGKPPKDIQEVPSRAAAAAAAPKAQPAQVIQAPPPQPP 109
>01_03_0150 +
13220224-13220468,13221903-13222124,13222164-13222376,
13222549-13222691,13225813-13226387,13226776-13227155,
13227256-13227342,13227469-13227799,13227880-13228290,
13228373-13228432,13228561-13228761
Length = 955
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 61 TGSDPFWRSGRNLTSTTNGIWNWIKVGRPRGWRQYSKR 174
T ++ WRSGR S+ +G+ N G RGWR+ ++
Sbjct: 179 TAAEVVWRSGRRQRSSGDGVDN----GGGRGWRRRGRQ 212
>04_01_0034 - 401208-402923
Length = 571
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -2
Query: 195 PPVLRLRSLGVLPPAPRASDLDPIPYSIC--STCQVPSGAPKRIAPCQPPAPPDI 37
PP + R+ PP P LDP P + + C+ P G + + PAPP I
Sbjct: 310 PPPQQQRAKPSRPPPP-PPPLDPPPRAAAPPAKCKRPDGCERFATRIKKPAPPPI 363
>01_06_0319 -
28441082-28441102,28441630-28441701,28442568-28442627,
28442918-28443105,28444300-28444327,28444880-28444907,
28444942-28445163,28445238-28445409,28446224-28447468,
28447573-28447741,28447820-28448045,28449096-28449451,
28449530-28449724,28450655-28450864,28451729-28452004
Length = 1155
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -1
Query: 103 LSSSFRSAKTDRSLSATSSSRYWYLSFFTGATFA 2
+SSS SAK+ RSLS SS+ Y S F+ T A
Sbjct: 602 ISSSLASAKSFRSLSYNSSAPSLYSSLFSWETDA 635
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/51 (33%), Positives = 20/51 (39%)
Frame = -2
Query: 195 PPVLRLRSLGVLPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
PP L + VLPP P +P + P K AP PP PP
Sbjct: 622 PPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPPPP 672
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -2
Query: 162 LPPAPRASDLDPIPYSICSTCQVPSGAPKRIA---PCQPPAPP 43
LPP P P+P +P G P + PCQPP PP
Sbjct: 1122 LPPLPDGPP--PLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPP 1162
>05_03_0387 +
13396158-13396271,13396390-13396434,13397004-13397632,
13397727-13397874,13397971-13398147,13398527-13398595,
13398699-13398788,13399000-13399158,13399663-13399753,
13399917-13400008,13400009-13400233,13400394-13400585
Length = 676
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 21 KKLRYQYLEELVADRERSVLALRKELDKYYKWNMEL 128
KKLR Q +E +A +++ V ALR+E++ ++ E+
Sbjct: 641 KKLRGQDVENRIAAQQQKVAALRQEVESLLEYISEI 676
>02_01_0360 -
2594534-2594601,2594778-2594829,2594915-2595029,
2595124-2595212,2595326-2595391,2595468-2595657,
2595811-2596037,2596111-2596185,2596283-2596354,
2596507-2596577,2596848-2597036,2597186-2597298,
2598063-2598268
Length = 510
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 195 ETKPF*-IFLFIFKSYNQFLVIIINKLVFCTVSCRNSYTIFRIEKKLQILLQK 350
E PF +F +IF + L + N + VS R Y+I + K +ILL+K
Sbjct: 312 EVHPFVWVFNYIFTDSRERLALCANWIFVIYVSIRRFYSISKQSKTERILLRK 364
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -2
Query: 189 VLRLRSLGVLPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
V +L+ + APR P P + +T S P R PP PP
Sbjct: 886 VTQLKLANIEKRAPRVPRPPPAPSATANTASALSPPPPRPPGAPPPPPP 934
>10_08_1037 - 22477358-22478752
Length = 464
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 195 PPVLRLRSLGVLPPAPRASDLDPIPYSICSTCQVPS 88
PP+ RL +L LP AS PI CS +PS
Sbjct: 131 PPIRRLHALPFLPGLRLASPPRPIAPPCCSPPPIPS 166
>10_05_0008 + 7791462-7791611,7792378-7792833
Length = 201
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 15 PVKKLRYQYLEELVADRERSVLALRKELDKYYKWNMELDQGRTPEGLE 158
P+ + Q+ EE V E SV L ++ K +K N+EL G+E
Sbjct: 137 PIVRAADQFQEEEVKSPEPSVHKLASQVKKLHKENIELRDRNAELGVE 184
>09_04_0321 - 16664316-16664939,16665369-16666262
Length = 505
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 55 WLTGSDPFWRSGRNLTSTTNGIWNWIKVGRPRGWRQYSKR 174
WL S P W+ R L ST ++ ++G RG R+ R
Sbjct: 127 WLPSSSPLWKHMRTLASTL--LFTSRRLGASRGIRERKAR 164
>07_01_0543 + 4008439-4008808,4009209-4009274,4009409-4009584
Length = 203
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 150 PRASDLDPIPYSICST-CQVPS-GAPKRIAPCQPPAPP 43
P+A + +P T Q+P+ G P ++P PP PP
Sbjct: 110 PKACNSMSVPLQCKDTSAQIPAAGVPVAVSPAMPPLPP 147
>06_01_0466 +
3313174-3313305,3313404-3313483,3313582-3313726,
3313820-3314245
Length = 260
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 33 YQY-LEELVADRERSVLALRKELDKYYKWNMELDQGRTPEGLEAVLQEIGAVKQEE 197
YQY LE V RE + +E+ + WN+ + L +L+ IGA K E
Sbjct: 43 YQYILETSVYPREHECMKELREVTANHPWNLMTTSADEGQFLNLLLKLIGAKKTME 98
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = -2
Query: 183 RLRSLGVLPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
RL L LPP P P P S PS + PPAPP
Sbjct: 297 RLPELSKLPPIPPPPPPPPPPPMPRSRSASPSPSTSSSGSAGPPAPP 343
>03_02_0283 -
7078754-7078856,7079358-7079431,7079995-7080090,
7080145-7080270,7080856-7080939,7081458-7081506,
7081630-7081688,7081908-7081925,7082141-7082620
Length = 362
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 159 PPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
PPAP A+ P P S +P+R A PAPP
Sbjct: 14 PPAPAAAAASPQPLPRAFLAAAAS-SPRRAAASPAPAPP 51
>12_02_0305 - 17235832-17236379,17237345-17237444
Length = 215
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Frame = -2
Query: 159 PPAPRASD-----LDPIPYSICSTCQVPSGAPKR---IAPCQPPAP 46
PP+PR + ++P P + + P AP + IAP QPP P
Sbjct: 82 PPSPRRASPPSVSVEPTPAPVIAPSPPPVVAPSQPPTIAPTQPPTP 127
>11_04_0046 + 12751830-12752285,12752385-12752670,12753329-12753786
Length = 399
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 15 PVKKLRYQYLEELVADRERSVLALRKELDKYYKWNMELDQGRTPEGLE 158
P+ + QY E+ V E S+ L ++ K K N+EL T G+E
Sbjct: 317 PIVRAPGQYQEDEVKSPEPSIHKLTAQVKKLCKENIELRDRNTELGVE 364
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -2
Query: 207 TVWFPPVLRLRSLGVL-PPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPPDIGI 31
T+ PP++ ++ V+ PPAP P P S + S +AP PP PP
Sbjct: 405 TIPMPPIIAAPAITVMPPPAPSQQPQPPPPPS--HPTPITS-----VAPAPPPPPPAAAA 457
Query: 30 *ASSR 16
A+S+
Sbjct: 458 AAASQ 462
>05_05_0387 +
24577448-24577638,24580375-24580767,24581078-24581208,
24581460-24581899
Length = 384
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 18 VKKLRYQYLEELVADRERSVLAL--RKELDKYYKWNMELDQGR 140
+ K ++ + E V +ER +L R E+D Y W++ L +GR
Sbjct: 86 INKTKFVFSGETVPPKERVLLFANHRTEVDWMYLWDLALRKGR 128
>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -2
Query: 195 PPVLRLRSLGVLPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
P ++ S + PPAP L IP S+ Q P G+ ++ PP PP
Sbjct: 923 PRMMPGSSFRMNPPAP----LPFIPSSVTPLTQFPGGSAQQSEKRPPPPPP 969
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,251,644
Number of Sequences: 37544
Number of extensions: 277060
Number of successful extensions: 1124
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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