Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0613
(637 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55988| Best HMM Match : bZIP_1 (HMM E-Value=7.4e-06) 47 1e-05
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_19212| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 29 3.2
SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 5.5
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2) 28 7.3
SB_4371| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0027) 28 7.3
SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13) 28 7.3
SB_17889| Best HMM Match : Patched (HMM E-Value=0.14) 27 9.7
>SB_55988| Best HMM Match : bZIP_1 (HMM E-Value=7.4e-06)
Length = 150
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +3
Query: 21 KKLRYQYLEELVADRERSVLALRKELDKYYKWNMELDQGRTPEGL 155
KKLRY+ LE+ V +E V LR+ELD Y +W +DQG P+ L
Sbjct: 94 KKLRYKCLEDTVTRKESEVSKLRQELDMYVRWCKAIDQGVYPKEL 138
>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3824
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 72 SVLALRKELDKYYKWNMELDQGRTPEGLEAVLQEIGAVKQE 194
S++ ++EL Y W+ LD G + L V EIG +K E
Sbjct: 3274 SIIGSQEELTGSYNWDYLLDWGPQFQPLAEVFLEIGRMKDE 3314
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -2
Query: 159 PP--APRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAP 46
PP AP PIP CS P+ AP AP PPAP
Sbjct: 764 PPQFAPVPPPCAPIPPMPCSAPLPPAPAPFSAAPHLPPAP 803
>SB_19212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 513
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = -2
Query: 621 RFLYLFITHVKKIEKNLKNESLM----AHRQCRFFETSRNFTRKSNATQEMTILEKLI*N 454
RFL +F+ ++K KNLK S + +H RF N ++ ++IL +I
Sbjct: 113 RFLIIFVKEIRKSYKNLKTRSELLCGDSHSSSRFIHRMTNLF-FADFKYSVSILSTVIVG 171
Query: 453 HFINFHIVLI 424
I + +V++
Sbjct: 172 GIIIYEVVIL 181
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 159 PPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
PP P A L P+P P +P +P QPP PP
Sbjct: 466 PPPPPAPALPPLPLPP-ELPGSPGDSPPATSPKQPPLPP 503
>SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 192 PVLRLRSLGVLPPAPRASDLDPIPYSICST--CQVPSGAPKRIA 67
P +R R LGV PAP ++ I +C +PS +RIA
Sbjct: 90 PAIRSRCLGVRIPAPSVEEICQILQFVCKKEGLTIPSELSRRIA 133
>SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 921
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 186 LRLRSLGVLPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPP 52
++++S +P P+ Y C T P+ AP +PC+PP
Sbjct: 247 IKVKSDKPVPLRPKPPTFIFHNYGECGTQSSPTNAPSIPSPCEPP 291
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 195 PPVLRLRSLGVLPPAPRASDLDPIPYSICSTCQVPS-GAPKRIAPCQPPAPP 43
PP+ + G P P ++ + I Q+P G P I P PPAPP
Sbjct: 2079 PPLKHQQQSG--PSLPMSAQQPVMQQPINQQVQIPQQGMPVNIQPGPPPAPP 2128
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -2
Query: 174 SLGVL--PPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQ 58
SLG L PP+PRA+ L S P K I PCQ
Sbjct: 936 SLGALSGPPSPRATALHHYRPQFLSELHPPQPQAKPIHPCQ 976
>SB_36581| Best HMM Match : HR1 (HMM E-Value=2.2)
Length = 760
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -2
Query: 129 PIPYSICS---TCQVPSGAPKRIAPCQPPAPPDI 37
PIPY + C +P G P+ + PC P P D+
Sbjct: 504 PIPYGVPEYLYPCPIPYGVPEYLYPC--PIPYDV 535
>SB_4371| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0027)
Length = 674
Score = 27.9 bits (59), Expect = 7.3
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +3
Query: 36 QYLEELVADRERSVLALRKELDKYYKWNM--ELDQGRTPEGLEAVLQEIGAVKQEETKPF 209
++L + +++R+R + AL++E+D N+ EL Q A L+ ++ E+ K
Sbjct: 125 EHLRDGISERDRVITALQEEMDHLRISNVSEELQQSANMLAKIADLKANSSISNEDKKQ- 183
Query: 210 *IFLFIFKSYNQFLVIIINKL 272
+++S++QFL + L
Sbjct: 184 ---AEVYQSHSQFLKAKVESL 201
>SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)
Length = 1134
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 165 VLPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPPD 40
++PP P L P S+ Q G R P +PP+ P+
Sbjct: 1046 IMPPKPSLEALMPWSTSVPPAGQTKVGREDRTMPPEPPSNPE 1087
>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
Length = 925
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Frame = +1
Query: 73 PFWRSGRNLTSTTNGIWNWIKVG--RPR----GWRQYSKRSEP 183
P R+G T T + W+W+KV RPR W Y + P
Sbjct: 795 PSCRNGFQATPTAHNAWHWLKVQEVRPREHGCPWNTYEPWTSP 837
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,747,827
Number of Sequences: 59808
Number of extensions: 317298
Number of successful extensions: 1006
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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