Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0613
         (637 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   1.5  
AJ697726-1|CAG26919.1|  198|Anopheles gambiae putative odorant-b...    23   8.1  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   8.1  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 18  VKKLRYQYLEELVADRERSVLALRKELDKYYK--WNMELDQGRTPEGLEAVLQE 173
           VK+   QY +ELV+ +E     L+  LDK+ K   NM     R  + LE +  E
Sbjct: 357 VKEEIKQY-DELVSAKESKESTLKNSLDKFAKVQANMRATNERRKKTLEQIAAE 409


>AJ697726-1|CAG26919.1|  198|Anopheles gambiae putative
           odorant-binding protein OBPjj16 protein.
          Length = 198

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 159 PPAPRASDLDPIPYSICSTCQVP 91
           PPAP AS   P   +    C++P
Sbjct: 19  PPAPDASCFQPTAVTAEDCCKIP 41


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 7/36 (19%), Positives = 21/36 (58%)
 Frame = +3

Query: 246 FLVIIINKLVFCTVSCRNSYTIFRIEKKLQILLQKI 353
           +++ +INK+ FC+      + + + E+ L+ +  ++
Sbjct: 74  YVIAVINKITFCSCYAPPRWDLEKFEEMLKRISDEV 109


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,852
Number of Sequences: 2352
Number of extensions: 9612
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)