Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0613
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 32 0.30
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 31 0.52
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 2.8
AC025716-19|AAK39602.2| 549|Caenorhabditis elegans Hypothetical... 29 2.8
Z81473-7|CAB60992.2| 661|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81063-8|CAB61013.2| 661|Caenorhabditis elegans Hypothetical pr... 29 3.7
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 29 3.7
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 29 3.7
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 29 3.7
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 29 3.7
AF492701-1|AAM49753.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF492700-1|AAM49752.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF492699-1|AAM49751.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF492698-1|AAM49750.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF492697-1|AAM49749.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF492696-1|AAM49748.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF492695-1|AAM49747.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF492694-1|AAM49746.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF492693-1|AAM49745.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF492692-1|AAM49744.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF492691-1|AAM49743.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF492690-1|AAM49742.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF492688-1|AAM49741.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF492687-1|AAM49740.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF492686-1|AAM49739.1| 647|Caenorhabditis elegans SPE-9 protein. 29 3.7
AF049327-1|AAC38980.1| 661|Caenorhabditis elegans sperm transme... 29 3.7
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical... 28 6.4
Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 27 8.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 27 8.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 27 8.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 27 8.5
AF016449-3|AAG23997.2| 337|Caenorhabditis elegans Serpentine re... 27 8.5
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 25 9.0
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 25 9.2
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 165 VLPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
+LPP P LDP P + ++ + P I+P PP PP
Sbjct: 322 ILPPPPPPMKLDPSPQPAATPVEI-TEIPPIISPPAPPPPP 361
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 31.5 bits (68), Expect = 0.52
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 180 LRSLGVLPPAPRASDLDPIPYSICSTCQVP--SGAPKRIAPCQPPAPP 43
L S ++P AP+ + +P P + + P + AP+ + PPAPP
Sbjct: 334 LNSNSIVPDAPKVEEPEPAPTPAPAPAEDPVVTPAPEELTTPPPPAPP 381
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 159 PPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
PP P + P P + + C P AP APC PP PP
Sbjct: 92 PPPPASPCCGPSP--VPAPCCPPPPAPA--APCCPPPPP 126
>AC025716-19|AAK39602.2| 549|Caenorhabditis elegans Hypothetical
protein Y39G10AR.17 protein.
Length = 549
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -2
Query: 162 LPPAPRASDLDPIPYSICSTCQVPSGAPK--RIAPCQPPAPP 43
+PP P + P PYS P+ AP+ AP PP PP
Sbjct: 314 VPPPPIPPPIQPPPYSYYPVA--PAAAPQVYHYAPPPPPPPP 353
>Z81473-7|CAB60992.2| 661|Caenorhabditis elegans Hypothetical
protein C17D12.6 protein.
Length = 661
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 258 CETLQIPSTAPKEFIPC 274
>Z81063-8|CAB61013.2| 661|Caenorhabditis elegans Hypothetical
protein C17D12.6 protein.
Length = 661
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 258 CETLQIPSTAPKEFIPC 274
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +3
Query: 30 RYQYLEELVADRERSVLALRKELDKYYKWNMELD 131
R Q LE++V ++E +ALR++L+ ++ + +LD
Sbjct: 897 RVQKLEDVVKEKEDKEIALRRDLEDSHEKSRDLD 930
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +3
Query: 30 RYQYLEELVADRERSVLALRKELDKYYKWNMELD 131
R Q LE++V ++E +ALR++L+ ++ + +LD
Sbjct: 897 RVQKLEDVVKEKEDKEIALRRDLEDSHEKSRDLD 930
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +3
Query: 30 RYQYLEELVADRERSVLALRKELDKYYKWNMELD 131
R Q LE++V ++E +ALR++L+ ++ + +LD
Sbjct: 657 RVQKLEDVVKEKEDKEIALRRDLEDSHEKSRDLD 690
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +3
Query: 30 RYQYLEELVADRERSVLALRKELDKYYKWNMELD 131
R Q LE++V ++E +ALR++L+ ++ + +LD
Sbjct: 897 RVQKLEDVVKEKEDKEIALRRDLEDSHEKSRDLD 930
>AF492701-1|AAM49753.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF492700-1|AAM49752.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF492699-1|AAM49751.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF492698-1|AAM49750.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF492697-1|AAM49749.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF492696-1|AAM49748.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF492695-1|AAM49747.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF492694-1|AAM49746.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF492693-1|AAM49745.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF492692-1|AAM49744.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF492691-1|AAM49743.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF492690-1|AAM49742.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF492688-1|AAM49741.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF492687-1|AAM49740.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF492686-1|AAM49739.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 244 CETLQIPSTAPKEFIPC 260
>AF049327-1|AAC38980.1| 661|Caenorhabditis elegans sperm
transmembrane protein protein.
Length = 661
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 111 CSTCQVPSGAPKRIAPC 61
C T Q+PS APK PC
Sbjct: 258 CETLQIPSTAPKEFIPC 274
>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
protein Y59A8B.1a protein.
Length = 1641
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 180 LRSLGVLPPAPRASDLDPIPYSICSTCQVPS 88
L L LPP PRAS+ P P +T VP+
Sbjct: 777 LELLAELPPPPRASEPPPPPPPPVATAPVPA 807
>Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical
protein F01G4.5 protein.
Length = 269
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +1
Query: 37 NIWRSWWLTGSDPFWRSGRNLTSTTNGIWNWIKVGRPRG 153
NIW W + FW N+ NG W++ P G
Sbjct: 42 NIWTPNWEWTVNEFWDQTGNVADNLNGTITWLR-SNPAG 79
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -2
Query: 159 PPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
P ++ +P+ C C P G P P PP PP
Sbjct: 131 PGKGASAPCEPVTQPPCQPC--PGGPPGPAGPAGPPGPP 167
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -2
Query: 159 PPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
P ++ +P+ C C P G P P PP PP
Sbjct: 131 PGKGASAPCEPVTQPPCQPC--PGGPPGPAGPAGPPGPP 167
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -2
Query: 159 PPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
P ++ +P+ C C P G P P PP PP
Sbjct: 131 PGKGASAPCEPVTQPPCQPC--PGGPPGPAGPAGPPGPP 167
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -2
Query: 159 PPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
P ++ +P+ C C P G P P PP PP
Sbjct: 131 PGKGASAPCEPVTQPPCQPC--PGGPPGPAGPAGPPGPP 167
>AF016449-3|AAG23997.2| 337|Caenorhabditis elegans Serpentine
receptor, class t protein15 protein.
Length = 337
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 334 CNFFSILKIVYEFLQLTVQNTNLLIIITKNWL*D 233
C F S+ ++Y ++QL V + L++I W+ D
Sbjct: 265 CFFHSVSALLYAYMQLFVGTSTLILIGHLTWICD 298
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 24.6 bits (51), Expect(2) = 9.0
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Frame = -2
Query: 195 PPVLRLRSLGVLP----PAPRASDLDPI----PYSICSTCQVPSGAPKRIAPCQPPAPP 43
PP R+ S G+ P P P +S I P P P + P PP PP
Sbjct: 559 PPPTRVESHGLAPARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPP 617
Score = 21.0 bits (42), Expect(2) = 9.0
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -2
Query: 69 APCQPPAPPDIGI 31
AP PP PP +G+
Sbjct: 629 APPPPPPPPPMGL 641
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 24.6 bits (51), Expect(2) = 9.2
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Frame = -2
Query: 195 PPVLRLRSLGVLP----PAPRASDLDPI----PYSICSTCQVPSGAPKRIAPCQPPAPP 43
PP R+ S G+ P P P +S I P P P + P PP PP
Sbjct: 385 PPPTRVESHGLAPARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPP 443
Score = 21.0 bits (42), Expect(2) = 9.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -2
Query: 69 APCQPPAPPDIGI 31
AP PP PP +G+
Sbjct: 455 APPPPPPPPPMGL 467
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,928,759
Number of Sequences: 27780
Number of extensions: 257888
Number of successful extensions: 903
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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