Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0613
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    25   0.81 
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    25   0.81 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.6  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 106 TTNGIWNWIKVGRPRGWRQYSKR 174
           T N + N++K  RP+ W + S +
Sbjct: 82  TANKVVNYLKTKRPKDWERLSAK 104


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 106 TTNGIWNWIKVGRPRGWRQYSKR 174
           T N + N++K  RP+ W + S +
Sbjct: 82  TANKVVNYLKTKRPKDWERLSAK 104


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 85  SGRNLTSTTNGIWNW 129
           SG+NLT+T N I  W
Sbjct: 28  SGKNLTNTLNVIHKW 42


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 61  TGSDPFWRSGRNLTSTT 111
           TG   +W  G+NL  TT
Sbjct: 138 TGGSCYWPRGKNLGGTT 154


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 149 LGRPTLIQFHI 117
           LG+PT++ FH+
Sbjct: 26  LGQPTIVYFHV 36


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +1

Query: 79  WRSGRNLTSTTNGIWNWIKVGRPRGWRQYSKRSE 180
           WR  R +  T     NW+ V     W+   +R +
Sbjct: 148 WRDARIVNGTRQPPNNWLSVFWGSAWQWNEERKQ 181


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 112 NGIWNWIKV 138
           NG+W WI++
Sbjct: 56  NGLWRWIRL 64


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 112 NGIWNWIKV 138
           NG+W WI++
Sbjct: 94  NGLWRWIRL 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,868
Number of Sequences: 438
Number of extensions: 3314
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)