Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0613
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43800.1 68415.m05445 formin homology 2 domain-containing pro...    31   0.64 
At4g13630.1 68417.m02121 expressed protein contains Pfam profile...    30   1.5  
At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37) iden...    29   2.6  
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro...    29   3.4  
At4g35010.1 68417.m04965 glycosyl hydrolase family 35 protein si...    28   4.5  
At2g16730.1 68415.m01919 glycosyl hydrolase family 35 protein si...    28   4.5  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    28   4.5  
At1g63570.1 68414.m07186 receptor-like protein kinase-related co...    28   6.0  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   6.0  
At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1) domain...    27   7.9  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   7.9  

>At2g43800.1 68415.m05445 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 894

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 123 PYSICSTCQVPSGAPKRIAPCQPPAPP 43
           P S+ S     +G PKR+ P +PP PP
Sbjct: 387 PVSLHSQISSNNGIPKRLCPARPPPPP 413


>At4g13630.1 68417.m02121 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 581

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 42  LEELVADRERSVLALRKELDKYYKWNMELDQ-GRTPEGLEAVLQEIGAVKQEETKPF 209
           L+E++  RER    L KE+D Y +  +E +Q   TP+   A ++ +    Q+ T+P+
Sbjct: 308 LKEILLRREREKHFLEKEVDTYRQMFLETEQPHNTPDSKPAQIERL-QTPQQITEPW 363


>At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37)
           identical to FKBP12 interacting protein (FIP37)
           GI:3859944 from [Arabidopsis thaliana]
          Length = 330

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
 Frame = +3

Query: 33  YQYLEELVADRERS---VLALRKELDKYYKWNMELDQGRTPEGLEAVLQEIGAVKQE 194
           Y+++EEL  D ERS   V+ L+++L++  K   E++  R  +GLE V + +G  K E
Sbjct: 263 YKHMEELTNDVERSNETVIILQEKLEEKEK---EIE--RVKKGLEIVSELVGDKKDE 314


>At2g25050.1 68415.m02996 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 1111

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/51 (37%), Positives = 21/51 (41%)
 Frame = -2

Query: 195 PPVLRLRSLGVLPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPP 43
           PP+  LR L   PP P      P P S   +   PS     IA   PP PP
Sbjct: 560 PPLKPLRILSRPPPPP-----PPPPISSLRSTPSPSSTSNSIATQGPPPPP 605


>At4g35010.1 68417.m04965 glycosyl hydrolase family 35 protein
           similar to beta-galactosidase BG1 GI:15081596 from
           [Vitis vinifera]
          Length = 845

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 158 LQPLGRPTLIQFHIP 114
           L PLG+PT I++HIP
Sbjct: 675 LSPLGQPTQIEYHIP 689


>At2g16730.1 68415.m01919 glycosyl hydrolase family 35 protein
           similar to beta-galactosidase BG1 GI:15081596 from
           [Vitis vinifera]
          Length = 848

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 158 LQPLGRPTLIQFHIP 114
           L PLG+PT I++HIP
Sbjct: 678 LSPLGQPTQIEYHIP 692


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -2

Query: 195 PPVLRLRSLGVLPPAPRASDLDPIPYSICSTCQVPSGAPKRIAP--CQPPAPPDIGI*AS 22
           PP L L      PP P +S L  +  S+  +   PS +P    P    P +PP + +  S
Sbjct: 58  PPPLSLSPSSPPPPPPSSSPLSSLSPSLSPS--PPSSSPSSAPPSSLSPSSPPPLSLSPS 115

Query: 21  S 19
           S
Sbjct: 116 S 116


>At1g63570.1 68414.m07186 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function DUF26; similar to receptor-like protein kinase
           4 (GI:13506745) [Arabidopsis thaliana]
          Length = 284

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 189 VLRLRSLGVLPPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAP 46
           +LR R+  +  PAP  S L PI  +      +P   P  ++  QPP P
Sbjct: 236 ILRYRTFVLPSPAPSPSSLPPISPTSSPPLSLPPQLPPPLS--QPPPP 281


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = -2

Query: 159 PPAPRASDLDPIPYSICSTCQVPSGAPKRIAPCQPPAPPDIG 34
           PP P A+   P P    S    P   P +  P  PP PP  G
Sbjct: 375 PPGP-ANQTSPPPPPPPSAAAPPPPPPPKKGPAAPPPPPPPG 415


>At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein  Pfam profile PF00564: PB1
           domain
          Length = 720

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 135 LDPIPYSICSTCQVPSGAPKRIAPCQPPAPPDI 37
           ++P P S+ ST    +      AP  PP PP +
Sbjct: 1   MEPPPSSLSSTAVASTSISAATAPVPPPLPPHV 33


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 30   RYQYLEELVADRERSVLALRKELDKYYKWNMELDQG--RTPEGLEAVLQEIGAVKQEE 197
            RY+  + +  DR++ VL LR + D+  K N   ++   +    L  +L E+  +K E+
Sbjct: 1245 RYKEAKAIEEDRDKQVLRLRGDYDEQVKKNSHSNEANLKLEADLMNLLMELEEIKVEK 1302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,921,057
Number of Sequences: 28952
Number of extensions: 233564
Number of successful extensions: 793
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)