Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0612
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...   170   2e-43
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    27   2.1  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    27   3.6  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   4.8  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   6.4  

>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score =  170 bits (414), Expect = 2e-43
 Identities = 78/139 (56%), Positives = 102/139 (73%)
 Frame = +3

Query: 279 SKVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANL 458
           +K  MR+V +P HR TPL+  W K++ P+VEHLLLQVR NTK+R+VE++    TKD   L
Sbjct: 77  AKPQMRRVPIPPHRMTPLRNVWPKLYPPLVEHLLLQVRMNTKSRSVELRESKATKDPGAL 136

Query: 459 QKAADFVKAFIYGFEVXXXXXXXXXXXXFVESFEVKDVKTLNGDHLSRAIGRLAGKAGRT 638
           QK  DFV+AF  GF++            ++++FE+KDVKTL GDHLSRAIGR+AG+ G+T
Sbjct: 137 QKGMDFVQAFALGFDIDDAIALLRLDDLYIDTFEIKDVKTLQGDHLSRAIGRIAGQGGKT 196

Query: 639 KFTIENVTKTRIVLADSKI 695
           KF IEN ++TRIVLADSKI
Sbjct: 197 KFAIENASRTRIVLADSKI 215


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -3

Query: 200 LFNLHTISGVICSFALYIFKLHRLFSWQKIINTY 99
           +F+++ I G+I S+ L IF++ RL S Q +  +Y
Sbjct: 27  IFSVYIIIGLIISYLLQIFRIVRLGSSQGLSFSY 60


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 409 LVFVLNLTCSNKCSTIGVNIFSQLSLSGVYL 317
           L F L  TC  +  ++ +N F     SG+YL
Sbjct: 25  LTFFLLTTCQLRILSLSINAFCVFGASGIYL 55


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 84  METENISVDDFLPAKKTMKLKNIKRKATDDTGDGMEVEEPT 206
           ++  N   D F+P  KT  L N+      +TG+ +   EPT
Sbjct: 427 IDPSNQPSDQFIPLLKTCALCNLSTVNQTETGEWVVKGEPT 467


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 212  PNCGLFNLHTISGVICSFALYIFKL 138
            P  G+FN + I  V+  FA++I  L
Sbjct: 1051 PQAGIFNTYIIGSVLGQFAIHIVTL 1075


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,008
Number of Sequences: 5004
Number of extensions: 47343
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)