Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0612
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2236| Best HMM Match : PkinA_anch (HMM E-Value=3.3)                 80   2e-15
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_34355| Best HMM Match : DUF827 (HMM E-Value=0.011)                  29   5.1  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)                 28   6.8  

>SB_2236| Best HMM Match : PkinA_anch (HMM E-Value=3.3)
          Length = 331

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
 Frame = +3

Query: 282 KVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIK---VGPETKDIA 452
           K   RK+ VP+HRYTPLKE+W+KIFTP+VEHL LQ+RFN  +R+VEI+   +   T   A
Sbjct: 245 KSETRKIPVPSHRYTPLKENWMKIFTPVVEHLKLQIRFNLGSRHVEIRAFSIRYPTAPSA 304

Query: 453 NLQKAADFVKAFI 491
           N   A+D + +F+
Sbjct: 305 NPVYASDALNSFV 317


>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 336 ESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIANLQKAADFVKAFIY 494
           E  L I  P  EHLL  VRF    R V     P+T  +   ++    +  F++
Sbjct: 575 EKRLIITFPYEEHLLRSVRFYLVFRGVGSSASPDTTGVVYFRQDVSNIDLFVF 627


>SB_34355| Best HMM Match : DUF827 (HMM E-Value=0.011)
          Length = 501

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 214 KAIQRSLEGTEKNIKKVQT-LMRVKLQCEKLRSQLTDIHHLRKA 342
           +AI+R L    +  K ++  L RVK++CE L+ +L +    RK+
Sbjct: 229 EAIERELTNYRQQCKHLENELDRVKVKCESLKEKLENAKRERKS 272


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 157  AKLQMTPEMVWRLKSPQLGKAIQRSLEGT-EKNIKKVQTLMRVKLQCEKLRSQLTDIH-H 330
            AK Q++ + +      Q  + +  SL+ T E+N++    L + + +C  LRSQL + +  
Sbjct: 962  AKQQLSDDELTIGNLQQENEFLNESLKDTHERNVELEHELAKARKECASLRSQLDENNIR 1021

Query: 331  LRKA 342
            +RKA
Sbjct: 1022 MRKA 1025


>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
          Length = 1413

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -2

Query: 138 SSSF*LAKNHQHLCSPFPFC 79
           SSSF LAK  QH+CS  P C
Sbjct: 306 SSSFRLAKKPQHVCSNPPSC 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,002,390
Number of Sequences: 59808
Number of extensions: 324236
Number of successful extensions: 734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)