Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0612
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.56 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   6.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 267 DPNESKVAMRKVAVPAHRYTPLKESWLKIF-TPIVEHLLLQVRFNTKTRNVEIKVGPETK 443
           DP E  V     A     YTPLKE     +  P +E L     F+T+     + VG E++
Sbjct: 179 DPPEPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEEL----GFDTEGLLPPVWVGGESE 234

Query: 444 DIANLQKAADFVKAFIYGF 500
            +A L++  +  KA++  F
Sbjct: 235 ALARLERHLE-RKAWVASF 252


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 468 QLSVNLQYLLFLVRLLSQHSSFSC*TLLVAISV 370
           ++ +  QYLL L+R L Q S+    TLL   SV
Sbjct: 135 KVDMTRQYLLQLIRNLRQSSALDGVTLLADNSV 167


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 648 IENVTKTRIVLADSKIIFWAVIRYCFGK 731
           IEN+   R  LA +  + W +  +C  K
Sbjct: 199 IENIGSIRWELAGTLAVVWIMCYFCIWK 226


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 648 IENVTKTRIVLADSKIIFWAVIRYCFGK 731
           IEN+   R  LA +  + W +  +C  K
Sbjct: 252 IENIGSIRWELAGTLAVVWIMCYFCIWK 279


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 582 NGDHLSR-AIGRLAGKAGRTKFTIENVTKTRIVLADSKIIFWAVIRYCF 725
           +G +LS  A G++ G+       + N  +T  + A +    WA+ R CF
Sbjct: 152 DGKYLSTLAPGKVLGELA----ILYNCKRTATITAATDCQLWAIDRQCF 196


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 516 RHHQLQNH 493
           RHH LQNH
Sbjct: 140 RHHHLQNH 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,762
Number of Sequences: 438
Number of extensions: 3151
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)