Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0612
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13230.1 68416.m01665 expressed protein                            174   4e-44
At5g61020.2 68418.m07656 YT521-B-like family protein contains Pf...    28   5.6  
At5g61020.1 68418.m07655 YT521-B-like family protein contains Pf...    28   5.6  

>At3g13230.1 68416.m01665 expressed protein
          Length = 215

 Score =  174 bits (424), Expect = 4e-44
 Identities = 79/141 (56%), Positives = 106/141 (75%)
 Frame = +3

Query: 273 NESKVAMRKVAVPAHRYTPLKESWLKIFTPIVEHLLLQVRFNTKTRNVEIKVGPETKDIA 452
           ++ KV  RK+AVP +RY+PLK++WL I+TPI + + + +R N K R VE+K   +T DI+
Sbjct: 34  SDGKVQFRKIAVPPNRYSPLKKAWLDIYTPIYDQMKVDIRMNLKARKVELKTRADTPDIS 93

Query: 453 NLQKAADFVKAFIYGFEVXXXXXXXXXXXXFVESFEVKDVKTLNGDHLSRAIGRLAGKAG 632
           NLQK+ADFV AF+ GF++            +VESFE+KDVKTL G+HLSRAIGRL+GK G
Sbjct: 94  NLQKSADFVHAFMLGFDIPDAISLLRMDELYVESFEIKDVKTLKGEHLSRAIGRLSGKGG 153

Query: 633 RTKFTIENVTKTRIVLADSKI 695
           +TKF IEN TKTRIV+AD++I
Sbjct: 154 KTKFAIENSTKTRIVIADTRI 174


>At5g61020.2 68418.m07656 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 493

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -2

Query: 543 INHLAGATLRHHQLQNHI*KPLQNQQ--LSVNLQYLLFLVRLLSQHSSFSC 397
           +  +  ++LRH  L+N+  KP+ N +    V L+  + ++++   H+S +C
Sbjct: 354 VKDIPNSSLRHITLENNENKPVTNSRDTQEVKLEQGIKVIKIFKDHASKTC 404


>At5g61020.1 68418.m07655 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 495

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -2

Query: 543 INHLAGATLRHHQLQNHI*KPLQNQQ--LSVNLQYLLFLVRLLSQHSSFSC 397
           +  +  ++LRH  L+N+  KP+ N +    V L+  + ++++   H+S +C
Sbjct: 356 VKDIPNSSLRHITLENNENKPVTNSRDTQEVKLEQGIKVIKIFKDHASKTC 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,837,415
Number of Sequences: 28952
Number of extensions: 234964
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)