Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0610
(750 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 282 6e-75
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 279 7e-74
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 279 7e-74
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 274 1e-72
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 273 3e-72
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 269 4e-71
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 265 7e-70
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 253 4e-66
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 250 3e-65
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 244 1e-63
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 243 4e-63
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 241 1e-62
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 225 7e-58
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 225 1e-57
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 223 5e-57
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 220 3e-56
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 217 2e-55
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 210 3e-53
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 204 2e-51
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 188 1e-46
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 184 3e-45
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 179 6e-44
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 179 8e-44
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 177 2e-43
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 169 5e-41
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 169 8e-41
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 166 6e-40
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 163 4e-39
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 161 1e-38
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 159 9e-38
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 158 1e-37
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 158 2e-37
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 156 5e-37
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 155 1e-36
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 151 1e-35
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 145 9e-34
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 143 4e-33
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 142 8e-33
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 141 1e-32
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 140 3e-32
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 140 4e-32
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 138 1e-31
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 138 2e-31
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 135 1e-30
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 135 1e-30
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 133 5e-30
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 132 7e-30
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 132 7e-30
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 132 1e-29
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 131 2e-29
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 131 2e-29
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 130 3e-29
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 128 1e-28
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 124 2e-27
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 124 3e-27
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 123 5e-27
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 122 7e-27
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 122 7e-27
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 122 9e-27
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 120 5e-26
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 120 5e-26
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 119 7e-26
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 119 7e-26
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 118 2e-25
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 116 6e-25
UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2; Br... 116 6e-25
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 113 3e-24
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 113 3e-24
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 113 4e-24
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 111 2e-23
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 107 4e-22
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 107 4e-22
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 106 5e-22
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 105 1e-21
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 104 3e-21
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 103 5e-21
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 102 1e-20
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 101 1e-20
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 101 2e-20
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 101 3e-20
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 99 1e-19
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 99 1e-19
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 99 1e-19
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 91 2e-17
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 90 5e-17
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 85 2e-15
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 84 4e-15
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 81 4e-14
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 80 5e-14
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 79 1e-13
UniRef50_Q9XLV8 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 74 4e-12
UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha... 73 6e-12
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 71 3e-11
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 62 1e-08
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 60 8e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 1e-07
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 58 2e-07
UniRef50_Q9TAP9 Cluster: Cytochrome c oxidase subunit I; n=2; To... 56 1e-06
UniRef50_A2T428 Cluster: Putative uncharacterized protein ORF820... 55 2e-06
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 55 2e-06
UniRef50_Q8LX74 Cluster: Cytochrome c oxidase subunit I; n=1; Ch... 54 4e-06
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 54 5e-06
UniRef50_Q9TCU2 Cluster: Cytochrome c oxidase subunit I; n=1; Ta... 53 9e-06
UniRef50_Q8LX82 Cluster: Cytochrome c oxidase subunit I; n=3; Ch... 51 4e-05
UniRef50_Q4XXN6 Cluster: Putative uncharacterized protein; n=1; ... 50 5e-05
UniRef50_Q6RCN4 Cluster: Cytochrome c oxidase subunit I; n=1; Bu... 50 6e-05
UniRef50_Q8LX70 Cluster: Cytochrome c oxidase subunit I; n=4; Ch... 49 1e-04
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 49 1e-04
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 48 2e-04
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 2e-04
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 47 4e-04
UniRef50_Q9MFX8 Cluster: Cytochrome oxidase I; n=5; Echinometra ... 46 8e-04
UniRef50_Q5VI63 Cluster: SoxB; n=3; Sulfolobaceae|Rep: SoxB - Ac... 45 0.002
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 44 0.004
UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7; Locu... 43 0.007
UniRef50_P98004 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 41 0.037
UniRef50_Q9TAP7 Cluster: Cytochrome oxidase subunit 1; n=1; Clon... 40 0.086
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 37 0.46
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C... 36 1.4
UniRef50_Q9YBH5 Cluster: Cytochrome c oxidase (Ba3-type) subunit... 35 1.9
UniRef50_Q8ZXC1 Cluster: Cytochrome C oxidase subunit I; n=3; Py... 35 1.9
UniRef50_Q2Y5N3 Cluster: Integral membrane proteins containing u... 35 2.5
UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 35 2.5
UniRef50_Q48874 Cluster: SakB; n=2; Lactobacillus sakei|Rep: Sak... 33 7.5
UniRef50_Q5CTJ9 Cluster: Cation-transporting ATPase; n=2; Crypto... 33 7.5
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ... 33 9.9
UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3; ... 33 9.9
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 282 bits (692), Expect = 6e-75
Identities = 144/249 (57%), Positives = 166/249 (66%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH
Sbjct: 79 GNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAH 138
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDL IFSLHLAG+SS S Q PLFV AV +TA
Sbjct: 139 AGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLS 198
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISH++
Sbjct: 199 LPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVV 258
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
+ GKKE F FIV AHH+FTVG+D+DTRAYFTSAT+IIA+PTG+
Sbjct: 259 AYYAGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGV 318
Query: 722 KIFR*LATI 748
K+F LAT+
Sbjct: 319 KVFSWLATL 327
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 279 bits (683), Expect = 7e-74
Identities = 141/249 (56%), Positives = 166/249 (66%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH
Sbjct: 79 GNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAH 138
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDL IFSLHLAG+SS + Q PLFV +V +TA
Sbjct: 139 AGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLS 198
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISH++
Sbjct: 199 LPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVV 258
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
+ GKKE F FIV AHH+FTVG+D+DTRAYFTSAT+IIA+PTG+
Sbjct: 259 TYYAGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGV 318
Query: 722 KIFR*LATI 748
K+F LAT+
Sbjct: 319 KVFSWLATL 327
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 279 bits (683), Expect = 7e-74
Identities = 142/249 (57%), Positives = 166/249 (66%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN LVPL++GAPD+AFPR+NN+ F +VE GAGTG TVYPPL+ N +H
Sbjct: 79 GNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSH 138
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDL IFSLHLAG+SS + Q PLFV +V ITA
Sbjct: 139 PGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLS 198
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISHI+
Sbjct: 199 LPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIV 258
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
+ GKKE F FIV AHH+FTVG+D+DTRAYFTSAT+IIA+PTG+
Sbjct: 259 TYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGV 318
Query: 722 KIFR*LATI 748
K+F LAT+
Sbjct: 319 KVFSWLATL 327
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 274 bits (672), Expect = 1e-72
Identities = 139/248 (56%), Positives = 163/248 (65%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN L+PL+LG+PD++FPR+NN+ F + G GTG TVYPPLS + H
Sbjct: 63 GNWLIPLMLGSPDMSFPRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGH 122
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDL IFSLHLAG SS + D++ LF +V ITA
Sbjct: 123 GGMSVDLGIFSLHLAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLS 182
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
AGAIT+LLTDRN+NTSFFDP+GGGDPILYQHLF FFGHPEVYILILPGFGIISH+I
Sbjct: 183 LPVLAGAITMLLTDRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGIISHMI 242
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
E GKKETF FIV AHH+FT+G+D+DTRAYFTSAT+IIA+PTGI
Sbjct: 243 FNESGKKETFGMLGMIYAMLTIGFLGFIVWAHHMFTIGMDVDTRAYFTSATMIIAIPTGI 302
Query: 722 KIFR*LAT 745
KIF +AT
Sbjct: 303 KIFSWMAT 310
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 273 bits (669), Expect = 3e-72
Identities = 140/249 (56%), Positives = 166/249 (66%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN VP+++GAPD+AFPR+NNI F +VE G+GTG TVYPPLS +H
Sbjct: 82 GNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSH 141
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G +VDLAIFSLHL+G+SS + +LPLFV +V +TAF
Sbjct: 142 SGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLS 201
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
AGAIT+LLTDRN NT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISHI+
Sbjct: 202 LPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHIV 261
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
S G K F F+V AHH+FTVG+D+DTRAYFT+AT+IIAVPTGI
Sbjct: 262 STFSG-KPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGI 320
Query: 722 KIFR*LATI 748
KIF +AT+
Sbjct: 321 KIFSWIATM 329
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 269 bits (660), Expect = 4e-71
Identities = 138/249 (55%), Positives = 164/249 (65%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN LVP+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H
Sbjct: 79 GNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSH 138
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDLAIFSLHL+GISS + +LPLFV A+ +TA
Sbjct: 139 SGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLS 198
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF FFGHPEVYILI+PGFG++SHI+
Sbjct: 199 LPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGMVSHIV 258
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
S G K F F+V +HH++ VG+D+DTRAYFT+AT+IIAVPTGI
Sbjct: 259 SAFSG-KPVFGYLGMVYAMFSIGILGFLVWSHHMYAVGLDVDTRAYFTAATMIIAVPTGI 317
Query: 722 KIFR*LATI 748
KIF LAT+
Sbjct: 318 KIFSWLATL 326
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 265 bits (650), Expect = 7e-70
Identities = 137/249 (55%), Positives = 165/249 (66%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN LVP+++G+PD+AFPR+NNI F +VE G GTG TVYPPLSS +H
Sbjct: 87 GNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSH 146
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G +VDLAIFSLH++G SS S ++PLFV ++ +TAF
Sbjct: 147 SGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLLLLA 206
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
AGAIT+LLTDRN NTSFFD +GGGDPILYQHLF FFGHPEVYILILPGFG+ISHI+
Sbjct: 207 VPVLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIV 266
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
S +K F FIV AHH++TVG+D+DTRAYFT+AT+IIAVPTGI
Sbjct: 267 S-TFSRKPVFGYIGMVYAMVSIGVLGFIVWAHHMYTVGLDVDTRAYFTAATMIIAVPTGI 325
Query: 722 KIFR*LATI 748
KIF +ATI
Sbjct: 326 KIFSWIATI 334
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 253 bits (619), Expect = 4e-66
Identities = 133/249 (53%), Positives = 158/249 (63%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN ++PL++GA D++FPRIN+I F +VE+GAGTG TVYPPLSS AH
Sbjct: 80 GNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAH 139
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDLAIFSLHL ISS S ++PLFV A+ ITAF
Sbjct: 140 SGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLLS 199
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
+ IT+LL DRN NTSFF+ AGGGDPI YQH F FFGHPEVYILI+PGFGI+SHI+
Sbjct: 200 LPVLSAGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPGFGIVSHIV 259
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
S KK F F+V +HH++ VG+D DTRAYFTSAT+IIA+PTGI
Sbjct: 260 S-TYSKKPVFGEISMVYAMASIGLLGFLVWSHHMYIVGLDADTRAYFTSATMIIAIPTGI 318
Query: 722 KIFR*LATI 748
KIF LATI
Sbjct: 319 KIFSWLATI 327
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 250 bits (612), Expect = 3e-65
Identities = 130/243 (53%), Positives = 155/243 (63%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN L+PL++GA D AFPRINNI F +VE+GAGTG TVYPPLSS AH
Sbjct: 80 GNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAH 139
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDLAIF+LHL ISS + +LPLFV ++ ITAF
Sbjct: 140 SGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLS 199
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
+ IT+LL DRN NTSFF+ +GGGDPILY+HLF FFGHPEVYILI+PGFGIISH++
Sbjct: 200 LPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPGFGIISHVV 259
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
S KK F F+V +HH++ VG+D DTRAYFTSAT+IIA+PTGI
Sbjct: 260 S-TYSKKPVFGEISMVYAMASIGLLGFLVWSHHMYIVGLDADTRAYFTSATMIIAIPTGI 318
Query: 722 KIF 730
KIF
Sbjct: 319 KIF 321
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 244 bits (598), Expect = 1e-63
Identities = 131/248 (52%), Positives = 152/248 (61%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN L+PL LG PD+ FPR+NNI + +ENG GTG T+YPPLS +H
Sbjct: 80 GNFLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSH 139
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDLAIF LHL+GISS +L LF AV ITA
Sbjct: 140 SGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLS 199
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
AG IT++LTDRN NTSFF+ AGGGDPILYQHLF FFGHPEVYILI+PGFGIIS I
Sbjct: 200 LPVLAGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISTTI 259
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
S K F F+V +HH++TVG+D+DTRAYFT+AT+IIAVPTGI
Sbjct: 260 S-ANSNKSVFGYLGMVYAMCSIGILGFVVWSHHMYTVGLDVDTRAYFTAATLIIAVPTGI 318
Query: 722 KIFR*LAT 745
KIF LAT
Sbjct: 319 KIFSWLAT 326
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 243 bits (594), Expect = 4e-63
Identities = 126/248 (50%), Positives = 153/248 (61%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN L+P+++G PD+AFPR+NN+ + I+ENG GTG T+YPPLS +H
Sbjct: 106 GNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSH 165
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
VDL IF LHL+GISS +L LF AV ITA
Sbjct: 166 SSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLLLS 225
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
A AIT+LLTDRNLNTSF++ AGGGD ILYQHLF FFGHPEVYILI+PGFGIIS +I
Sbjct: 226 LPVLAAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYILIIPGFGIISTVI 285
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
S K F FIV +HH++TVG+D+DTRAYFT+AT+IIA+PTG+
Sbjct: 286 S-ANSNKNVFGYLGMVYAMMSIGLLGFIVWSHHMYTVGLDVDTRAYFTAATLIIAIPTGV 344
Query: 722 KIFR*LAT 745
KIF LAT
Sbjct: 345 KIFSWLAT 352
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 241 bits (591), Expect = 1e-62
Identities = 124/249 (49%), Positives = 150/249 (60%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN VP+++GAPD++FPR+NN F E G GTG TVYPPLSS +H
Sbjct: 83 GNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSH 142
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDL IFS HL GI S LPLFV +V +T+F
Sbjct: 143 SGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVA 202
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
A AIT+LL DRN NTSF+DP GGGD +LYQHLF FFGHPEVYILILPGFG++SHII
Sbjct: 203 IPVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILILPGFGLVSHII 262
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
+ KK F FIV AHH++T GID T+AYFT+AT++IA+PTGI
Sbjct: 263 A-TFSKKRVFGHVPMIAAMLMIGLIGFIVWAHHMYTSGIDTSTKAYFTAATMVIAIPTGI 321
Query: 722 KIFR*LATI 748
K+F +AT+
Sbjct: 322 KVFNWIATM 330
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 225 bits (551), Expect = 7e-58
Identities = 112/249 (44%), Positives = 153/249 (61%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN +PL++GAPD+AFPR+NN+ + +++ GAG G T YPP+S+
Sbjct: 185 GNYFMPLMIGAPDMAFPRLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVE 244
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
R+VD AIF++H++G SS + ++PLF +V +TA+
Sbjct: 245 TSRAVDFAIFAVHVSGASSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLS 304
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
AGAIT+LLTDRN T+FFDPAGGGDPIL+QH+F FFGHPEVYI+ILP FG+ISHI+
Sbjct: 305 LPVLAGAITMLLTDRNFGTTFFDPAGGGDPILFQHIFWFFGHPEVYIVILPAFGVISHIV 364
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
+ KK F F+V AHH++TVG+ + +AYF AT++IAVPTGI
Sbjct: 365 A-TFSKKPIFGYLPMVYALVAIGGLGFVVWAHHMYTVGMTLTQQAYFMVATMVIAVPTGI 423
Query: 722 KIFR*LATI 748
KIF +AT+
Sbjct: 424 KIFSWIATM 432
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 225 bits (549), Expect = 1e-57
Identities = 122/253 (48%), Positives = 153/253 (60%), Gaps = 4/253 (1%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVE----NGAGTG*TVYPPLSS 169
GN VP+++GAPD+AFPR+NNI F V NGAGTG TVY PLS+
Sbjct: 119 GNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALLLGSTFVPGGTGNGAGTGWTVYAPLST 178
Query: 170 NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFX 349
+ G +VD+AI SLH+AG SS + ++PLFV +V +TAF
Sbjct: 179 S-GSAGPAVDMAILSLHIAGASSILGAINFITTILNMRAPGMTLHKMPLFVWSVLVTAFL 237
Query: 350 XXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 529
A AIT+LLTDRN T+F+D AGGGDP LYQHLF FFGHPEVYI+ILPGFGII
Sbjct: 238 LLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDPELYQHLFWFFGHPEVYIMILPGFGII 297
Query: 530 SHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAV 709
S I+S +K F F+V AHH+FT G+ ++ + YFT+AT++IAV
Sbjct: 298 SQIVS-TFSRKPVFGYLGMAYAMVAIGVVGFVVWAHHMFTTGMSVNVKMYFTAATMVIAV 356
Query: 710 PTGIKIFR*LATI 748
PTGIKIF +ATI
Sbjct: 357 PTGIKIFSWIATI 369
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 223 bits (544), Expect = 5e-57
Identities = 115/248 (46%), Positives = 151/248 (60%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHS 157
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
G S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 158 GSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 544
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P FG++S I+
Sbjct: 218 PVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVVSQIV- 276
Query: 545 QERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIK 724
Q KK F F V +HH+FTVG+D D+RAYF+ A++IIA+PTG K
Sbjct: 277 QVYAKKPIFGKIGMIYAMASIGFLGFCVWSHHMFTVGLDADSRAYFSGASLIIAIPTGSK 336
Query: 725 IFR*LATI 748
IF LATI
Sbjct: 337 IFSWLATI 344
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 220 bits (537), Expect = 3e-56
Identities = 114/190 (60%), Positives = 128/190 (67%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH
Sbjct: 80 GNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAH 139
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDLAIFSLHLAGISS S Q PLFV +V ITA
Sbjct: 140 AGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLLS 199
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISH++
Sbjct: 200 LPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVV 259
Query: 542 SQERGKKETF 571
+ GKKE F
Sbjct: 260 TYYAGKKEPF 269
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 217 bits (531), Expect = 2e-55
Identities = 111/169 (65%), Positives = 119/169 (70%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN L+PL+LGAPD+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH
Sbjct: 52 GNWLIPLMLGAPDMAFPRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAH 111
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDLAIFSLHLAGISS SFDQ+PLF+ AVGITA
Sbjct: 112 GGSSVDLAIFSLHLAGISSILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLS 171
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 508
AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 172 LPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI 220
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 210 bits (513), Expect = 3e-53
Identities = 108/165 (65%), Positives = 116/165 (70%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN LVPL+LGAPD+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH
Sbjct: 76 GNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAH 135
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDLAIFSLHLAGISS SFDQ+PLFV AVGITAF
Sbjct: 136 GGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLS 195
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 496
AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 196 LPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 204 bits (497), Expect = 2e-51
Identities = 105/250 (42%), Positives = 141/250 (56%), Gaps = 1/250 (0%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN +PL++ D++ PR+NN+ + G G G T+YPPLS++
Sbjct: 81 GNWFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFM 140
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXX 358
G +DLA+FSLH+AG+SS F L P+ + + T+
Sbjct: 141 DGLPIDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVT 200
Query: 359 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 538
A +T+LL DR+ +TSF+ P GGGDPIL+QHLF FFGHPEVYILILP FG+ISHI
Sbjct: 201 SVPVLAAGLTLLLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHPEVYILILPAFGVISHI 260
Query: 539 ISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTG 718
+ + K F F+V HH+F G+DIDTRAYFT+AT++IAVPTG
Sbjct: 261 LCRSSAKLHVFGKIGMSWASMGIAWMGFLVWGHHMFVAGLDIDTRAYFTAATLMIAVPTG 320
Query: 719 IKIFR*LATI 748
+K+F LATI
Sbjct: 321 VKVFNWLATI 330
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 188 bits (459), Expect = 1e-46
Identities = 98/223 (43%), Positives = 129/223 (57%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHS 157
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
G S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 158 GSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 544
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P FG++S I+
Sbjct: 218 PVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVVSQIV- 276
Query: 545 QERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTR 673
Q KK F F V +HH+FTVG+D D R
Sbjct: 277 QVYAKKPIFGKIGMIYAMASIGFLGFCVWSHHMFTVGLDADKR 319
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 184 bits (447), Expect = 3e-45
Identities = 98/248 (39%), Positives = 130/248 (52%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN ++PL+LGAP++AFPR+N + F + G G+ T YPPLS
Sbjct: 90 GNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQ 148
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
S+D I LH GI S + DQ+ +FV +T+F
Sbjct: 149 PELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLS 208
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
AG++ LL DRN NTSF+D GG+P+LYQHLF FFGHPEVY++ILP FGIIS +
Sbjct: 209 VPVLAGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILPVFGIISEAV 268
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
K F V HH++T G+DIDTR YF++AT+IIA+P+ +
Sbjct: 269 LFLTDKDRLFGQTSMTFASIWIAVLGTSVWGHHMYTAGLDIDTRTYFSAATMIIAIPSAV 328
Query: 722 KIFR*LAT 745
KIF L T
Sbjct: 329 KIFNWLGT 336
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 179 bits (436), Expect = 6e-44
Identities = 95/249 (38%), Positives = 136/249 (54%), Gaps = 1/249 (0%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN +P++ G+P++A+PRIN+I E G GTG T+YPPLS+++
Sbjct: 84 GNYFLPILCGSPELAYPRINSISLLLQPIAFVLVILSTAAEFGGGTGWTLYPPLSTSLMS 143
Query: 182 RGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 358
+VD+ IF L ++G++S + L + ++ IT+
Sbjct: 144 LSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHLRAKGLTLGILSVSTWSLIITSGMLLL 203
Query: 359 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 538
G + +LL+D + NT FFDP GDPILYQHLF FFGHPEVYILILP FG+ISH+
Sbjct: 204 TLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILPAFGVISHV 263
Query: 539 ISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTG 718
IS + F +V HH++T G+++DTRAYFTS TI+I++PTG
Sbjct: 264 ISTNY-CRNLFGNQSMILAMGCIAVLGSLVWVHHMYTTGLEVDTRAYFTSTTILISIPTG 322
Query: 719 IKIFR*LAT 745
K+F + T
Sbjct: 323 TKVFNWICT 331
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 179 bits (435), Expect = 8e-44
Identities = 93/157 (59%), Positives = 110/157 (70%)
Frame = -1
Query: 471 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 292
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 291 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 112
+R I+E PAKC+EKI STD P CAI SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 111 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFP 1
L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFP
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFP 156
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 177 bits (432), Expect = 2e-43
Identities = 94/242 (38%), Positives = 128/242 (52%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N +P++ G PD+ FPR+NN+ F + E G G G T+YP L H
Sbjct: 83 NYFIPVMAGFPDMVFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHS 142
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
+ D +F++HL GISS SF LF+ A ITA
Sbjct: 143 SLACDFVMFAVHLLGISSILNSINLLGTLFCCRRKFFSFLSWSLFIWAALITAILLIITL 202
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 544
AG +T++L DRN NTSF+D GGGD IL+QH+F FFGHPEVYI++LP FG+IS I+
Sbjct: 203 PVLAGGVTLILCDRNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYIILLPVFGLISTIV- 261
Query: 545 QERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIK 724
+ G + F V AHH+F VG+D+D+RAYF +I+I +PT +K
Sbjct: 262 EVIGFRCVFSTVAMIYSMILIAILGMFVWAHHMFVVGMDVDSRAYFGGVSILIGLPTCVK 321
Query: 725 IF 730
+F
Sbjct: 322 LF 323
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 169 bits (412), Expect = 5e-41
Identities = 89/157 (56%), Positives = 99/157 (63%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN LVPL+LGAPD+AFPR+NN+ F VE+GAGTG TVYPPLS N AH
Sbjct: 62 GNWLVPLMLGAPDMAFPRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAH 121
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDLAIFSLHLAG+SS + + LFV +V ITA
Sbjct: 122 AGPSVDLAIFSLHLAGVSSILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLS 181
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 472
AGAIT+LLTDRN NTSFFDPAGGGDPILYQHLF
Sbjct: 182 LPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 218
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 169 bits (410), Expect = 8e-41
Identities = 88/161 (54%), Positives = 102/161 (63%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN VPL++GAPD+AFPR+NNI F +VE GAGTG TVYPPL+S AH
Sbjct: 80 GNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAH 139
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVD+AIFSLHLAG+SS + ++PLFV +V ITA
Sbjct: 140 SGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLLLS 199
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 484
AGAIT+LLTDR NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 200 LPVLAGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWFFG 240
Score = 67.7 bits (158), Expect = 3e-10
Identities = 31/43 (72%), Positives = 38/43 (88%)
Frame = +2
Query: 620 FIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATI 748
FIV A H++ VG+D+DTRAYFT+AT+IIAVPTGIKIF LAT+
Sbjct: 250 FIVWADHMYVVGMDVDTRAYFTAATMIIAVPTGIKIFSWLATV 292
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 166 bits (403), Expect = 6e-40
Identities = 86/157 (54%), Positives = 99/157 (63%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN LVP+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H
Sbjct: 79 GNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSH 138
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDLAIFSLHL+GISS + +LPLFV A+ +TA
Sbjct: 139 SGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLS 198
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 472
AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 199 LPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 163 bits (396), Expect = 4e-39
Identities = 92/190 (48%), Positives = 110/190 (57%), Gaps = 4/190 (2%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSS 169
GN L+PL++G PD+AFPR+NNI F I+E G GTG T+ YPPLS
Sbjct: 108 GNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSG 167
Query: 170 NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFX 349
+H G SVDLAIF+LHL+G+SS +L LF A +
Sbjct: 168 LQSHSGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALFGWATWSSRSR 227
Query: 350 XXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 529
IT++LTDRN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI+PGFGII
Sbjct: 228 YFL-------GITMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPGFGII 280
Query: 530 SHIISQERGK 559
S IS K
Sbjct: 281 STTISSSSNK 290
Score = 67.3 bits (157), Expect = 4e-10
Identities = 29/37 (78%), Positives = 35/37 (94%)
Frame = +2
Query: 635 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LAT 745
HH++TVG+D+DTRAYFT+AT+IIAVPTGIKIF LAT
Sbjct: 349 HHMYTVGLDVDTRAYFTAATLIIAVPTGIKIFSWLAT 385
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 161 bits (392), Expect = 1e-38
Identities = 96/243 (39%), Positives = 121/243 (49%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN +P+ L D+ PR+N++ G G G T+YPPLS
Sbjct: 177 GNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPPLSI-WEG 233
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G VD +FSLHLAG+SS S + V A T+
Sbjct: 234 SGFGVDYLMFSLHLAGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAYLFTSVLLLLS 288
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
A IT+LL DRN T+FF+P+GGGDPIL+QHLF FFGHPEVY+LILPGFGI+SHI
Sbjct: 289 LPVLASGITMLLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLILPGFGIVSHIC 348
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
+F +V HH+F VG D T +F+S T+II VPTGI
Sbjct: 349 MSLSNNDSSFGYYGLICAMASIVCLGSVVWGHHMFMVGFDSLTGVFFSSITMIIGVPTGI 408
Query: 722 KIF 730
K+F
Sbjct: 409 KVF 411
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 159 bits (385), Expect = 9e-38
Identities = 87/156 (55%), Positives = 96/156 (61%)
Frame = +2
Query: 20 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 199
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 200 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 379
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 380 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 487
AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 158 bits (384), Expect = 1e-37
Identities = 85/170 (50%), Positives = 102/170 (60%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN L+PL++GA D AFPRINNI F +VE+GAGTG TVYPPLSS AH
Sbjct: 80 GNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAH 139
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDLAIF+LHL ISS + +LPLFV ++ ITAF
Sbjct: 140 SGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLS 199
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 511
+ IT+LL DRN NTSFF+ +GGGDPILY+HLF FFG I++L
Sbjct: 200 LPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIML 249
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 158 bits (383), Expect = 2e-37
Identities = 97/248 (39%), Positives = 132/248 (53%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N L+P PD+ FPR+N + F ++ + A G T YPPLSS
Sbjct: 75 NLLIPYHCNLPDLLFPRMNALSFWLMPFSLSL-----LLFSMASAGWTFYPPLSS----L 125
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
SV+ ++FSLHLAGI+S + L LF ++ + +
Sbjct: 126 SPSVEFSVFSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSL 183
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 544
A IT++LTD++L T F+D GGDP+LYQHLF FFGHPEVY++ILP FG+ S I
Sbjct: 184 PVLAVGITLILTDKHLGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVILPVFGLFSSSI- 242
Query: 545 QERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIK 724
Q +V AHH++T G+DIDTR+YFT+AT+IIAVPTGIK
Sbjct: 243 QLSSLHRIPGELSLVLAMASIALIGSVVWAHHMYTAGLDIDTRSYFTAATMIIAVPTGIK 302
Query: 725 IFR*LATI 748
IF L+++
Sbjct: 303 IFTWLSSL 310
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 156 bits (379), Expect = 5e-37
Identities = 72/114 (63%), Positives = 87/114 (76%)
Frame = +2
Query: 407 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXX 586
N T+FFDPAGGGD IL+QHLF FFGHPEVYILILPGFG+ISH+I+ GK+E F
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMISHVIAHYSGKREPFGYLGM 250
Query: 587 XXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATI 748
F+V AHH+FTVG+D+DTRAYFT+AT+IIAVPTGIK+F +AT+
Sbjct: 251 VYAMIAIGVLGFLVWAHHMFTVGMDVDTRAYFTAATMIIAVPTGIKVFSWMATL 304
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 155 bits (376), Expect = 1e-36
Identities = 86/245 (35%), Positives = 134/245 (54%), Gaps = 2/245 (0%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIA 178
GN L+P+++G +++ PR+N I F ++ +G T+YPPLS+ A
Sbjct: 89 GNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGWTLYPPLSTRDA 148
Query: 179 HR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 355
G ++DL++ +H+ GISS +F + ++ ++ +T+
Sbjct: 149 DNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYNFSIIVTSILLI 208
Query: 356 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 535
AIT LL DRN+N++ +D G DP+LYQHLF FFGHPEVY++ILP FG+ S
Sbjct: 209 GSLPILGVAITGLLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVYVIILPVFGLTSL 266
Query: 536 IISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPT 715
I++ K+ F + V AHH+FTVG+DID+R+YF+ AT II++PT
Sbjct: 267 ILTSII-HKDIFGREGMMYCIISIGVVGYFVWAHHMFTVGLDIDSRSYFSIATSIISIPT 325
Query: 716 GIKIF 730
+K+F
Sbjct: 326 SVKMF 330
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 151 bits (367), Expect = 1e-35
Identities = 80/161 (49%), Positives = 97/161 (60%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN ++PL++GA D AFPRINNI F +VE+GAGTG TVYPPL+S AH
Sbjct: 80 GNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAH 139
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDLAIF+LH+ ISS + +LPLFV A+ ITA
Sbjct: 140 SGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLLT 199
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 484
+ +T+LL DRN NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 200 LPVLSAGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 145 bits (352), Expect = 9e-34
Identities = 89/249 (35%), Positives = 119/249 (47%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN +VPL++GA D+AFPR+N + V G Y PL+
Sbjct: 97 GNYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFA 156
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
VD I + L G++S + +++PLFV + AF
Sbjct: 157 PTAGVDYWIVGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFA 216
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
A LL DR+ T FF P GGD +L+QHLF FFGHPEVYILILP GIIS ++
Sbjct: 217 FPVLTVATIQLLFDRHFGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILILPTMGIISEVL 276
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
+K F F+V AHH+F VG+ A+F +A+ +IAVPTG+
Sbjct: 277 -PTFSRKPIFGYAFVAYSGVAIGFLGFLVWAHHMFAVGLGPLANAFFGAASFLIAVPTGV 335
Query: 722 KIFR*LATI 748
KIF LAT+
Sbjct: 336 KIFNWLATM 344
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 143 bits (347), Expect = 4e-33
Identities = 85/248 (34%), Positives = 119/248 (47%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N VPL++GA D+AFPR+N+ F + + G Y PLSS
Sbjct: 99 NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSS 158
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
+ VD I L + GI S S ++PLFV + + A
Sbjct: 159 LQGVDYWIIGLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILAL 218
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 544
A+ +LL DR L ++FFDP GG +L+QH F FGHPEVYILILPGFG+IS +I
Sbjct: 219 PALNSALAMLLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPGFGMISEVI- 277
Query: 545 QERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIK 724
+K + + V AHH+F VG+ + +F +++IA+PTGIK
Sbjct: 278 PVFSRKPIYGYTFVAASSVAIVLLGYGVWAHHMFAVGLGMYADIFFAVGSLLIAIPTGIK 337
Query: 725 IFR*LATI 748
+F AT+
Sbjct: 338 VFNWTATL 345
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 142 bits (344), Expect = 8e-33
Identities = 91/248 (36%), Positives = 117/248 (47%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N L+PL++G D+AFPR+N + F V G T YPPLS
Sbjct: 94 NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKW 152
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
G +L I SL L G SS +PLF A+ T+
Sbjct: 153 GE--ELWILSLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLST 210
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 544
A A+ +L D TSFF+P GGGDP++YQHLF F+ HP VYI+ILP FG+IS +I
Sbjct: 211 PVLASALILLSFDLIAGTSFFNPVGGGDPVVYQHLFWFYSHPAVYIMILPFFGVISEVI- 269
Query: 545 QERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIK 724
+K F IV AHH+FT G R +F + T++IAVPTGIK
Sbjct: 270 PVHARKPIFGYRAIAYSSLAISFLGLIVWAHHMFTSGTPGWLRMFFMATTMLIAVPTGIK 329
Query: 725 IFR*LATI 748
IF T+
Sbjct: 330 IFSWCGTL 337
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 141 bits (342), Expect = 1e-32
Identities = 77/170 (45%), Positives = 97/170 (57%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN L+PL+LGA D+AF R+NNI F +VE GAGTG TVY PL+ +H
Sbjct: 85 GNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSH 144
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G +VDLAIFSLHL+G SS ++ +PLF AV TA
Sbjct: 145 SGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLLS 204
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 511
A +T+ + DRN NTSFF+ AGGGD +LYQHLF ++ HPEV I+ L
Sbjct: 205 LPVLAAGLTMGIFDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 140 bits (340), Expect = 3e-32
Identities = 84/249 (33%), Positives = 120/249 (48%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN L P++LG D+ +PR+N +E G+GTG T+YPPLS+++++
Sbjct: 87 GNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWTLYPPLSTSLSN 146
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G +D IF L AGI+S D++ ++ +T+F
Sbjct: 147 VG--IDFIIFGLLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAAWSIVLTSFLLLLS 204
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
++ DR+ NT FF+ + GDP+LYQHLF FFGHPEVYI+ILPGFGIIS ++
Sbjct: 205 LPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIMILPGFGIISLLL 264
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
S KE F + YFT+ TI+IA+PTG
Sbjct: 265 STYT-TKEMFGNQTMILAMGFNSFVRLFGLGTSYVHIRFGSRYSRYFTTVTILIALPTGN 323
Query: 722 KIFR*LATI 748
KIF + T+
Sbjct: 324 KIFNWVTTL 332
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 140 bits (338), Expect = 4e-32
Identities = 73/171 (42%), Positives = 100/171 (58%), Gaps = 2/171 (1%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHS 157
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
G S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 158 GSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH--PEVYILIL 511
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFG P + I+I+
Sbjct: 218 PVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPIIIIIII 268
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 138 bits (335), Expect = 1e-31
Identities = 85/249 (34%), Positives = 120/249 (48%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN L+PL++GA D+AFPR+N + + I N T T YPP S N +
Sbjct: 37 GNFLLPLMIGAKDVAFPRLNALSWWAFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--N 94
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
L +F +HL G SS +F + LFV +
Sbjct: 95 DAGVTALYVFVMHLLGASSIATAVNFLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVG 154
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
AGA+T+L D+ L T+FF+PA GGDP++YQ++F F+ HP VY+ +LP FG S II
Sbjct: 155 VPSLAGAVTMLFLDKYLGTNFFNPAKGGDPLIYQNIFWFYSHPVVYVQVLPVFGFYSEII 214
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
++ F F + HH+F G+ TR F+ T++IAVPTGI
Sbjct: 215 -PVFARRPLFGYTSMVFAVWAITAVSFFLWIHHMFVSGVPNWTRVLFSYTTLLIAVPTGI 273
Query: 722 KIFR*LATI 748
KIF + T+
Sbjct: 274 KIFNWMLTL 282
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 138 bits (333), Expect = 2e-31
Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 2/251 (0%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYPPLSSNI 175
GN +PL++ A D+AFPRIN I F ++ A T T+Y PLS +
Sbjct: 134 GNYFIPLLIDADDMAFPRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQM 193
Query: 176 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 355
+ +VD+ + LHL G+S+ + L +F + +
Sbjct: 194 S--SPAVDMMMLGLHLTGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLIL 251
Query: 356 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 535
A+ +LL DRN T+FF AGG DPI +QHLF FFGHPEVY+L+LP GI+S
Sbjct: 252 FAFPLFGSALIMLLLDRNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLPPMGIVSL 310
Query: 536 IISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPT 715
I+ + G+K F F V AHH+FT GID R+ F + ++ I++P+
Sbjct: 311 ILPKFSGRK-LFGFKFVVYSTLAIGVLSFGVWAHHMFTTGIDPRIRSSFMAVSLAISIPS 369
Query: 716 GIKIFR*LATI 748
+K+F + T+
Sbjct: 370 AVKVFNWITTM 380
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 135 bits (327), Expect = 1e-30
Identities = 95/256 (37%), Positives = 127/256 (49%), Gaps = 8/256 (3%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXX--IVEN-GAGTG*TVYPPLS--- 166
N L+PL++GA D+AFPRIN I F I E A TG T+Y PLS
Sbjct: 161 NYLIPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGE 220
Query: 167 --SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 340
N A+ G VDL + LHL+G+S+ S+ L +F +
Sbjct: 221 GMGNQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQ 278
Query: 341 AFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGF 520
+ AI +LL DRN TSFF AG G IL+QHLF FFGHPEVYI++LP
Sbjct: 279 SGLILFAFPLLGSAIMMLLFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLPPM 336
Query: 521 GIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATII 700
GIIS+I+ + G++ F F V AHH+F G+D RA F + ++
Sbjct: 337 GIISYILPRFSGRR-LFGFKFVVYSTLAIGVLSFGVWAHHMFATGLDPRLRASFMAVSLA 395
Query: 701 IAVPTGIKIFR*LATI 748
IAVP+ +K F + T+
Sbjct: 396 IAVPSAVKTFNWITTM 411
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 135 bits (326), Expect = 1e-30
Identities = 74/144 (51%), Positives = 85/144 (59%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN L+PL++GAPD+AFPR+NN+ F +E GAGTG TVYPPL+ N+AH
Sbjct: 68 GNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAH 127
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDL IFSLHLAGISS S Q PLFV AV ITA
Sbjct: 128 AGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLLS 187
Query: 362 XXXXAGAITILLTDRNLNTSFFDP 433
A IT+LLTDRNLNT+FFDP
Sbjct: 188 LPVLAAGITMLLTDRNLNTTFFDP 211
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 133 bits (321), Expect = 5e-30
Identities = 80/246 (32%), Positives = 119/246 (48%)
Frame = +2
Query: 11 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 190
LVPL++G IAFPR+N + V+ G G Y PLS G+
Sbjct: 98 LVPLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGK 157
Query: 191 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 370
D+ + +S+ S D++PLFV ++ +T+F
Sbjct: 158 RADIWAQMITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPA 217
Query: 371 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQE 550
A T L+ DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ LP G++S I++
Sbjct: 218 IMIASTSLILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAVGMVSSIVATF 277
Query: 551 RGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 730
++ F F + HH+F G+ ++FT++++ IAVP G++IF
Sbjct: 278 T-QRPVFGYLAMVMALIATGVLAFGLWVHHMFVAGLPRLGESFFTASSMAIAVPAGLQIF 336
Query: 731 R*LATI 748
LATI
Sbjct: 337 CWLATI 342
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 132 bits (320), Expect = 7e-30
Identities = 82/251 (32%), Positives = 114/251 (45%), Gaps = 3/251 (1%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNI 175
N L+P ++GAPD+AFP++N F G A +G YPP+S + +
Sbjct: 103 NLLIPTMIGAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPL 162
Query: 176 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 355
H L I ++ L+GISS F ++P+FV
Sbjct: 163 GHFINGEFLWILAVALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQL 222
Query: 356 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 535
G +LL D + TSFF P GGGDP+L+QH F F+ HP VY+L+LP FGI S
Sbjct: 223 IGLPALTGGAVMLLFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGIFSE 282
Query: 536 IISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPT 715
+ +K F IV AHH+F G R F T++IA+PT
Sbjct: 283 LF-PVYARKPLFGYRFVAIASFGITFLSLIVWAHHMFYTGTPNWMRHIFMFTTMLIAIPT 341
Query: 716 GIKIFR*LATI 748
G+K+F L T+
Sbjct: 342 GVKVFAWLGTL 352
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 132 bits (320), Expect = 7e-30
Identities = 74/174 (42%), Positives = 100/174 (57%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHS 157
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
G S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 158 GSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 526
A +T+LL DRN NTSFF +GGGDP+LY+H+ F+ +P V ILI GI
Sbjct: 218 PVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHI--FYKNP-VLILIWLTSGI 268
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 132 bits (318), Expect = 1e-29
Identities = 81/254 (31%), Positives = 119/254 (46%), Gaps = 6/254 (2%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 181
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 362 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 526
A +LL +R+L FF DPA GDP L+QH+F FFGHPEVYIL+LP G+
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAMGL 263
Query: 527 ISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIA 706
+S +I Q ++ + F V HH+FT D R AT+ +A
Sbjct: 264 VSEVI-QRMARRRAYGYTAIAISSVAIASISFAVWMHHMFTAVQDFAPRVAMAIATMAVA 322
Query: 707 VPTGIKIFR*LATI 748
+P+G+K+F +AT+
Sbjct: 323 IPSGVKVFNWVATL 336
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 131 bits (316), Expect = 2e-29
Identities = 78/248 (31%), Positives = 113/248 (45%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N +VPL +GA D+AFP +NN+ F ++ G T Y PL+SN
Sbjct: 120 NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSP 179
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
G + + L +AGI + + ++P+F IT
Sbjct: 180 GPGENYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAF 239
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 544
A+ +L DR FF GG P+L+ +LF +GHPEVYI+ILP FGI S IIS
Sbjct: 240 PVLTVALALLSFDRLFGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGIFSEIIS 299
Query: 545 QERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIK 724
+K+ F F+V HH FT+G ++F+ T+ I++PTG+K
Sbjct: 300 -SFARKQLFGYKAMVGSIIAISVLSFLVWTHHFFTMGNSASVNSFFSITTMAISIPTGVK 358
Query: 725 IFR*LATI 748
IF L T+
Sbjct: 359 IFNWLFTM 366
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 131 bits (316), Expect = 2e-29
Identities = 77/248 (31%), Positives = 115/248 (46%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N +VPL +GA D++FP +N + F + G T Y LS + +
Sbjct: 91 NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASLS--LHSK 148
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
G +D + L ++G+ + ++ +LPLF + +
Sbjct: 149 GHGIDFFVLGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTTFVASALILFAF 208
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 544
+ +++ DR T+FF+P GG+ ++++HLF FGHPEVYILILP FGI S +I
Sbjct: 209 PPLTVGLALMMLDRLFGTNFFNPELGGNTVIWEHLFWIFGHPEVYILILPAFGIFSEVI- 267
Query: 545 QERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIK 724
+K F F+V HH+FT G+ A F AT+ IA+PTGIK
Sbjct: 268 PVFARKRLFGYSSMVFAIVLIGFLGFMVWVHHMFTTGLGPIANAIFAVATMAIAIPTGIK 327
Query: 725 IFR*LATI 748
IF L TI
Sbjct: 328 IFNWLLTI 335
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 130 bits (315), Expect = 3e-29
Identities = 81/248 (32%), Positives = 116/248 (46%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N +VPL +GA D+AFP +N++ F V N A TG YPPL+
Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
VD I++L ++GI + +P+F
Sbjct: 185 DVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFTWTCTWANVLIATSF 244
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 544
GA+ +L DR L+ FF GG+ ++Y +LF +GHPEVYIL+LP FGI S ++S
Sbjct: 245 PILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILVLPAFGIFSEVVS 304
Query: 545 QERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIK 724
GK+ F F+V HH FT+G + A+F AT+II++PTG+K
Sbjct: 305 TFAGKR-LFGHKSMIYASGAISVLGFMVWLHHFFTMGSGANVNAFFGIATMIISIPTGVK 363
Query: 725 IFR*LATI 748
+F L TI
Sbjct: 364 LFNWLFTI 371
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 128 bits (309), Expect = 1e-28
Identities = 56/81 (69%), Positives = 62/81 (76%)
Frame = +1
Query: 406 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRN 585
K KYIIF S W F+STFILIFWT SLYFNFT IWYNFSYYF K KK N W+F +
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYNFSYYFPSKSKKGNLWVFSD 66
Query: 586 NLCYTSNWVIRIHCLSSSYIH 648
NLCY SNW+I I+CLSSSYI+
Sbjct: 67 NLCYISNWIISIYCLSSSYIY 87
Score = 41.5 bits (93), Expect = 0.021
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +2
Query: 677 YFTSATIIIAVPTGIKIFR*LAT 745
YFTSAT+IIAVPTGIKIF LAT
Sbjct: 97 YFTSATMIIAVPTGIKIFSWLAT 119
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 124 bits (300), Expect = 2e-27
Identities = 78/248 (31%), Positives = 110/248 (44%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N VPL +GA D+AFP +N++ F V A TG YPPL+
Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
G VD I++L L+G+ + +P+F
Sbjct: 184 GVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFTWTCTWANVLIVASF 243
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 544
A+ +L DR L+ F GG+P++Y +LF +GHPEVYILILP FG+ S + S
Sbjct: 244 PILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILPAFGVFSEVTS 303
Query: 545 QERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIK 724
GK+ F F V HH FT+G +F AT++I++PTG+K
Sbjct: 304 TFAGKR-LFGHHSMIYASGAIAVLGFAVWLHHFFTMGAGASVNTFFGLATMLISIPTGVK 362
Query: 725 IFR*LATI 748
+F L TI
Sbjct: 363 LFNWLFTI 370
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 124 bits (298), Expect = 3e-27
Identities = 77/250 (30%), Positives = 119/250 (47%), Gaps = 2/250 (0%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAH 181
N +VPL +GA D+AFPR+N + + E+GA G T+Y PL++ I
Sbjct: 88 NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYT 147
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G +DLA ++ L +S + ++P+F ++ T
Sbjct: 148 PGIGLDLAALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWA 207
Query: 362 XXXXAGAITILLTDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 538
+LL DRNL T FF +PAGG +L+ HLF FFGHPEVYIL+ P G ++ +
Sbjct: 208 FPPLMVGGALLLLDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPALGAMADV 265
Query: 539 ISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTG 718
IS G K + F+V HH+F G +I TR +++ TI+I++P
Sbjct: 266 ISTFSG-KPIYAKRYILTAFLIATIISFVVWMHHMFITGTNIYTRLFYSITTILISIPFE 324
Query: 719 IKIFR*LATI 748
+ + + T+
Sbjct: 325 MAVMSFIFTL 334
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 123 bits (296), Expect = 5e-27
Identities = 78/250 (31%), Positives = 115/250 (46%), Gaps = 1/250 (0%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN ++PL+LGA D+AFPR+N + ++ G TG T Y P S AH
Sbjct: 109 GNFMLPLMLGAKDVAFPRLNLLSLYIYLAGAVLALWG-MLNGGLDTGWTFYTPYS---AH 164
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
+V +F + G SS ++ ++PLFV A+ T+
Sbjct: 165 TTTTVAPVLFGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIYATS-CIQVL 223
Query: 362 XXXXAGAITILLTDRNL-NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 538
G + +L+T NL FDPA GGDP+L+QHLF F+ HP VYI++LP FG++S +
Sbjct: 224 ATPVIGLLLVLVTVENLFGFGMFDPARGGDPVLFQHLFWFYSHPAVYIMVLPSFGVMSEV 283
Query: 539 ISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTG 718
++ +K F F HH+F G F T+I+ V T
Sbjct: 284 VA-TYSRKNIFGYRAVAYSSLGIAFVGFFAWGHHMFVSGQSTFAGGLFGVLTMIVGVFTA 342
Query: 719 IKIFR*LATI 748
IK+F + T+
Sbjct: 343 IKVFNWVGTV 352
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 122 bits (295), Expect = 7e-27
Identities = 78/255 (30%), Positives = 117/255 (45%), Gaps = 6/255 (2%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIA 178
GN L+PL++GA D+AFPR+N F G AG G T Y PLS+N+
Sbjct: 111 GNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVLASFFAPLGSAGAGWTTYTPLSTNVG 170
Query: 179 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 358
G L + ++ + G+SS ++ +LPL + + +TA
Sbjct: 171 MPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLRAPGMTYMRLPLTIWGLWLTAILNAL 230
Query: 359 XXXXXAGAITILLTDRNLNTSFFDPA-----GGGDPILYQHLF*FFGHPEVYILILPGFG 523
A +LL DR+ T FF GGGDPIL+QHLF FGHPEVYI+ILP +G
Sbjct: 231 FVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGDPILWQHLFWIFGHPEVYIMILPAWG 290
Query: 524 IISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIII 703
I+ ++S +K +V HH+F G+ F T++I
Sbjct: 291 ILGDVLS-FFARKPHHWYRGTVWAMVLVTVLSAMVYGHHMFMTGMSPLLGEGFMLFTLLI 349
Query: 704 AVPTGIKIFR*LATI 748
++P+ + + + T+
Sbjct: 350 SIPSMVVVVNWVLTL 364
>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
buchholtzi (Butterflyfish)
Length = 184
Score = 122 bits (295), Expect = 7e-27
Identities = 57/91 (62%), Positives = 68/91 (74%)
Frame = +2
Query: 476 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 655
FFGHPEVYILILPGFG+ISHI++ GKKE F FIV AHH+FTVG
Sbjct: 2 FFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVG 61
Query: 656 IDIDTRAYFTSATIIIAVPTGIKIFR*LATI 748
+D+DTRAYFTSAT+IIA+PTG+K+F LAT+
Sbjct: 62 MDVDTRAYFTSATMIIAIPTGVKVFSWLATL 92
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 122 bits (294), Expect = 9e-27
Identities = 80/249 (32%), Positives = 112/249 (44%), Gaps = 1/249 (0%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNIAH 181
N ++PL +GAPD+AFPR+N F + GA G T+Y PLS I
Sbjct: 105 NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHS 164
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G D+ I + GI S + ++P+F + + +
Sbjct: 165 PGLGSDMWIVGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLI 224
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
A +L DR L +DPA GG +L+QHLF FFGHPEVY+L LP FGI+S II
Sbjct: 225 FPLLLAAALGVLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFGIVSEII 283
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
+K F V AHH+F G + +F+ T +I+VPTG+
Sbjct: 284 -PVFSRKPMFGYVGLIFATLSIGALSMAVWAHHMFVTGAVL--LPFFSFMTFLISVPTGV 340
Query: 722 KIFR*LATI 748
K F + T+
Sbjct: 341 KFFNWVGTM 349
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 120 bits (288), Expect = 5e-26
Identities = 82/264 (31%), Positives = 122/264 (46%), Gaps = 15/264 (5%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVE-NGAGTG*TVYPPLS---S 169
GN L+PL++GA D+AFP +N + + + +GA G T YPPLS +
Sbjct: 113 GNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFFFGGAFFCDGHGAAAGWTSYPPLSDMTT 172
Query: 170 NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFX 349
+ G + L + + G+SS + +LPL + A+ ITA
Sbjct: 173 SAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTTIIQMRAPGMTMFRLPLTIWAMFITALL 232
Query: 350 XXXXXXXXAGAITILLTDRNLNTSFFDP-----------AGGGDPILYQHLF*FFGHPEV 496
A ++L DR + T FF P AGGG P+L+QHLF F+ HP V
Sbjct: 233 QAFALPVLTAAGFMMLADRLIGTGFFLPEGLVVNNSPMAAGGGQPLLWQHLFWFYSHPAV 292
Query: 497 YILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRA 676
YI+ILP G++S I++ +K F FIV HH+F G++
Sbjct: 293 YIMILPAMGMVSDILAC-FSRKPIFGYKPMVYSICGIAGLGFIVWGHHMFVSGMNPGLGM 351
Query: 677 YFTSATIIIAVPTGIKIFR*LATI 748
F AT++IA+P+ +K F L T+
Sbjct: 352 TFMVATMMIALPSAVKTFNWLGTV 375
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 120 bits (288), Expect = 5e-26
Identities = 85/263 (32%), Positives = 121/263 (46%), Gaps = 14/263 (5%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSN 172
GN L+PL++GA D+ FP +N + + V G G G T+YPP + S
Sbjct: 106 GNYLIPLMVGARDMVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSG 165
Query: 173 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFX 349
+ + L + SL L I + +LPL V + T
Sbjct: 166 TPGQDWGIVLMLSSLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMA 225
Query: 350 XXXXXXXXAGAITILLTDRNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVY 499
G++ +LL DR L TSFF P GGG P+L+QHLF FFGHPEVY
Sbjct: 226 LLAFPALFVGSVMLLL-DRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVY 284
Query: 500 ILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAY 679
I+ LP FGI+S +IS +K F F+V AHH++ G+ +
Sbjct: 285 IVALPAFGIVSDLIS-THARKNIFGYRMMVWAIVAIGALSFVVWAHHMYVSGMYPYFGFF 343
Query: 680 FTSATIIIAVPTGIKIFR*LATI 748
F + T+IIA+PT IK++ + T+
Sbjct: 344 FATTTLIIAIPTAIKVYNWVLTL 366
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 119 bits (287), Expect = 7e-26
Identities = 73/246 (29%), Positives = 116/246 (47%)
Frame = +2
Query: 11 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 190
L+PL++GA D+ FPR+ + + + G +Y PLS++ G
Sbjct: 124 LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGL 183
Query: 191 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 370
S D + + LA I+S S ++P+ + + TAF
Sbjct: 184 SADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPP 243
Query: 371 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQE 550
+L +R L FFD GGDP+L+QHLF FGHPEVYI+ LP G+++ ++
Sbjct: 244 LIIGSILLEAERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLPAAGMVATMLPTF 303
Query: 551 RGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 730
G K F F + AHH+F G+ I + + F++A+ ++AVPTG++IF
Sbjct: 304 VG-KPLFGYGFAVAAVVTMSFLSFGLWAHHMFATGLPILSLSLFSAASTMVAVPTGVQIF 362
Query: 731 R*LATI 748
+AT+
Sbjct: 363 CFIATL 368
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 119 bits (287), Expect = 7e-26
Identities = 76/250 (30%), Positives = 114/250 (45%), Gaps = 1/250 (0%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIA 178
GN +VPL+LGA D+A PR+N + GA G T Y P S A
Sbjct: 91 GNFVVPLMLGARDVALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---A 147
Query: 179 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 358
VD + ++ L G SS S ++P++V +V +
Sbjct: 148 QSESGVDFYLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLF 207
Query: 359 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 538
A ++L +R + S+F+PA GGDP+L+Q F F+ HP VY+++LP GI++ +
Sbjct: 208 SLAGLTAATLLVLLERKIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGILAEV 267
Query: 539 ISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTG 718
S +K F +V AHH+FTVG + F T +IAVPTG
Sbjct: 268 AS-TFARKPLFGYRQMVWAQMGIVVLGTMVWAHHMFTVGESTLFQIAFAFFTALIAVPTG 326
Query: 719 IKIFR*LATI 748
+K+F + T+
Sbjct: 327 VKLFNIIGTL 336
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 118 bits (284), Expect = 2e-25
Identities = 79/252 (31%), Positives = 112/252 (44%), Gaps = 4/252 (1%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSN 172
N +PL++GA D+AFPR+N + ++ G G Y L+S
Sbjct: 96 NYFLPLMIGARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSV 155
Query: 173 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXX 352
G D L L GI + + ++P+FV +T+
Sbjct: 156 QFTSGLGPDFWTLGLLLLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAII 215
Query: 353 XXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 532
A+ +L+ DR +FF+ GG + YQHLF FGHPEVYILILP GIIS
Sbjct: 216 IFAFPSVTVALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAMGIIS 275
Query: 533 HIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVP 712
+I +K F F V +HH+FTVG+ + F+ T+ IAVP
Sbjct: 276 EVI-PVHARKMLFGYSVMVFSTALIGFMGFTVWSHHMFTVGMGPVVNSIFSLTTMAIAVP 334
Query: 713 TGIKIFR*LATI 748
TG+KIF L+T+
Sbjct: 335 TGVKIFNWLSTM 346
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 116 bits (279), Expect = 6e-25
Identities = 76/248 (30%), Positives = 112/248 (45%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 544
+ + DR L+T F+ GG +LY +L +GHPEVYILILP FGI S IIS
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGIFSEIIS 298
Query: 545 QERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIK 724
K F F+V HH FT+G + +F+ +T+IIA+PTG+K
Sbjct: 299 Y-ICVKSVFSYISLIYATISITVLSFLVWLHHFFTMGSGYLSNIFFSISTMIIAIPTGVK 357
Query: 725 IFR*LATI 748
IF + TI
Sbjct: 358 IFNWIFTI 365
>UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2;
Bruchidius|Rep: Cytochrome c oxidase subunit I -
Bruchidius aff. varius GLK-2003
Length = 339
Score = 116 bits (279), Expect = 6e-25
Identities = 57/85 (67%), Positives = 64/85 (75%)
Frame = +2
Query: 491 EVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDT 670
EVYILILPGFG+ISHIISQE GKKE F F+V AHH+FTVG+D+DT
Sbjct: 155 EVYILILPGFGMISHIISQESGKKEAFGTLGMIYAMMAIGLLGFVVWAHHMFTVGMDVDT 214
Query: 671 RAYFTSATIIIAVPTGIKIFR*LAT 745
RAYFTSAT+IIAVPTGIK+F LAT
Sbjct: 215 RAYFTSATMIIAVPTGIKVFSWLAT 239
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 113 bits (273), Expect = 3e-24
Identities = 72/246 (29%), Positives = 112/246 (45%)
Frame = +2
Query: 11 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 190
++PL+LG D+ FPR+N + ++ G YPPL+ G
Sbjct: 105 IIPLMLGTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGL 164
Query: 191 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 370
+D + IS+ S +++P+FV AV + +F
Sbjct: 165 GLDFYTTVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPP 224
Query: 371 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQE 550
A +L DR FF A GDPIL+QHLF FFGHPEVYI+ +P G++S II
Sbjct: 225 LVIASLMLALDRMAGMHFFT-AASGDPILWQHLFWFFGHPEVYIIFIPALGMVSSIIITF 283
Query: 551 RGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 730
++ F F + HH+FT G+ +FT+++ +IA+P+G++IF
Sbjct: 284 T-QRPIFGYIPIVLSIVAIGFIGFGLWVHHMFTAGLPQLGSNFFTASSAMIAIPSGVQIF 342
Query: 731 R*LATI 748
+AT+
Sbjct: 343 CWIATL 348
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 113 bits (273), Expect = 3e-24
Identities = 71/249 (28%), Positives = 109/249 (43%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN L+P+++GA D+AFP++N + F +V+ GA TG T Y P S+
Sbjct: 102 GNFLLPIMIGAKDVAFPKLNLLSFYVYLAGAVVALFG-MVQGGADTGWTFYTPYSTTTIT 160
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
+ V L F L G SS + +LPLFV ++ T+
Sbjct: 161 KVVPVLLGAFIL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILA 217
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
++ ++ + FDPA GGDP+L+QH F F+ HP VYI++LP +IS ++
Sbjct: 218 TPVLGMSLLLVAVEHAFGWGIFDPARGGDPVLFQHFFWFYSHPAVYIMVLPAMAVISEVV 277
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
+K F F HH+FT G F ++ + + T I
Sbjct: 278 C-AFSRKNIFGYKAVAYSSLGIAFVGFFTWGHHMFTSGQSAFNGGVFGVLSMFVGIFTAI 336
Query: 722 KIFR*LATI 748
K+F AT+
Sbjct: 337 KVFNWTATL 345
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 113 bits (272), Expect = 4e-24
Identities = 83/262 (31%), Positives = 121/262 (46%), Gaps = 14/262 (5%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*-TVYPPLSS---N 172
N L+PL +GA D+A +N + + +E G +G +YPPLS+
Sbjct: 128 NFLIPLQIGARDMASGFMNMLSYWFFFGSSVIMFASIFLETGPASGSWVIYPPLSALPQA 187
Query: 173 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXX 352
++ G + + + S+ L IS SF +LPL + A ITA
Sbjct: 188 MSGSGAGMTMWLISMALFIISVLLGGINYITTVINLRVKGMSFTRLPLTIWAFFITAIIG 247
Query: 353 XXXXXXXAGAITILLTDRNLNTSFFDP----AG------GGDPILYQHLF*FFGHPEVYI 502
A +L+ DR+L TSFF AG GG P+L+QHLF F GHPEVYI
Sbjct: 248 LLSFPVLFSAALLLIFDRSLGTSFFLSEIYIAGEALHHQGGSPVLFQHLFWFLGHPEVYI 307
Query: 503 LILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYF 682
+++P GI S +I+ +K F FIV AHH+F G++ + F
Sbjct: 308 VLIPALGITSEVIA-TNARKPIFGYKAMIGSILGIAVLSFIVWAHHMFVTGMNPFLGSVF 366
Query: 683 TSATIIIAVPTGIKIFR*LATI 748
T+IIAVP+ +K F + T+
Sbjct: 367 MFLTLIIAVPSAVKSFNYITTL 388
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 111 bits (266), Expect = 2e-23
Identities = 76/242 (31%), Positives = 104/242 (42%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 544
L DR L+ FF GG+ + + ++F FGHPEVYILILP FG+ S I S
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILPAFGVYSEIFS 323
Query: 545 QERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIK 724
G K F F+V HH FT+G A F A+++I +PTG+K
Sbjct: 324 TFSG-KVLFGYKSLVWATISIAFLSFLVWLHHFFTMGQSGHINAVFGIASMLIGIPTGVK 382
Query: 725 IF 730
I+
Sbjct: 383 IY 384
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 107 bits (256), Expect = 4e-22
Identities = 68/246 (27%), Positives = 108/246 (43%)
Frame = +2
Query: 11 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 190
L+P +L A D+ FPR++ + G +YPPL+ G
Sbjct: 108 LLPQMLAARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGD 167
Query: 191 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 370
+ D + + IS+ S ++P+F A+ I A
Sbjct: 168 NADFWLLGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFPA 227
Query: 371 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQE 550
A +L +R+ FF GGDP+L+QHLF FFGHPEVYI+ LP G++S I+
Sbjct: 228 VILATMLLEIERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVYIIFLPAAGLVSMIV-PT 286
Query: 551 RGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 730
+ F + HH+FT GI + +F++A++ +A+P+GI++F
Sbjct: 287 MARHPLVGYRLIVVALIGTGFFSFGLWVHHMFTTGIPSLSLGFFSAASMAVAIPSGIQVF 346
Query: 731 R*LATI 748
+ATI
Sbjct: 347 SWIATI 352
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 107 bits (256), Expect = 4e-22
Identities = 69/246 (28%), Positives = 107/246 (43%)
Frame = +2
Query: 11 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 190
L+P +LG+ D+AFPR+ F + +G +YPPLSS + G
Sbjct: 98 LLPKLLGSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGI 157
Query: 191 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 370
+ D + + IS+ S ++P+F +TA
Sbjct: 158 NSDFWLIGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPP 217
Query: 371 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQE 550
+L +R + FF A GGD +L+QHLF FGHPEVYI+ LP G IS I+
Sbjct: 218 LILGSILLELERAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFLPAAGAISTIL-PV 276
Query: 551 RGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 730
+ F + HH+FT GI A+F++A+ ++AVPT +++F
Sbjct: 277 MARTGLLGYGWIVAAAVALGVLSFGLWVHHMFTTGIPHLGLAFFSAASTLVAVPTAVQLF 336
Query: 731 R*LATI 748
+ T+
Sbjct: 337 IWIGTL 342
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 106 bits (255), Expect = 5e-22
Identities = 68/246 (27%), Positives = 108/246 (43%)
Frame = +2
Query: 11 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 190
L+P +LG+ D+A+PR++ F + +G +YPPL+S + G
Sbjct: 98 LLPKMLGSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGI 157
Query: 191 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 370
+ D + + IS+ S D++P++ +TA
Sbjct: 158 NSDFWLLGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPP 217
Query: 371 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQE 550
+L +R FF A GGD +L+QHLF FGHPEVYI+ LP G IS I+
Sbjct: 218 LILGSILLELERAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLPAAGAISTIL-PV 276
Query: 551 RGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 730
+ E F + HH+FT GI A F++A+ ++AVPT +++F
Sbjct: 277 MARTELIGYRWVVAAAISLAVLSFGLWVHHMFTTGIPHMGLALFSAASTLVAVPTAVQLF 336
Query: 731 R*LATI 748
+ T+
Sbjct: 337 AWIGTL 342
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 105 bits (252), Expect = 1e-21
Identities = 71/248 (28%), Positives = 109/248 (43%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N L PL+LG+ D+AFPR+ + + G Y PL+S
Sbjct: 116 NYLWPLMLGSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSA 175
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
G ++D+ + L GIS+ S D+LP+ V +
Sbjct: 176 GANIDIYGLGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAV 235
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 544
+ A +L DRN T FFD A GG P+L+QHLF F HP VY+++LP GI+S +
Sbjct: 236 PSVSLAFLLLWLDRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAMGIVSDAL- 294
Query: 545 QERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIK 724
++ F V HH+F GI A+F +A+++I++P+ +
Sbjct: 295 PTFCRRPLVAYEAVAVSTVATMLIGFEVWVHHMFATGIAPLALAFFGAASMLISIPSAVA 354
Query: 725 IFR*LATI 748
+F +ATI
Sbjct: 355 VFAWIATI 362
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 104 bits (249), Expect = 3e-21
Identities = 58/126 (46%), Positives = 69/126 (54%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN LVP+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H
Sbjct: 79 GNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSH 138
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SVDLAIFSLHL+GISS + +LPLFV A+ +TA
Sbjct: 139 SGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLS 198
Query: 362 XXXXAG 379
AG
Sbjct: 199 LPVLAG 204
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 103 bits (247), Expect = 5e-21
Identities = 75/263 (28%), Positives = 113/263 (42%), Gaps = 14/263 (5%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP---PLSSN 172
GN L+PL++GA D+AFP++N + + G G T YP L+
Sbjct: 117 GNFLIPLMIGADDMAFPKLNMLSYWFMWPAIACFGMSFKYAGGPAAGWTSYPVLADLAQA 176
Query: 173 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXX 352
G + + + G SS +F +LP+ + + ITA
Sbjct: 177 APGSGTAQTYWLLGVTFVGFSSMMGSINYMTTIINMRAPGMTFFRLPMTIWGLFITAILQ 236
Query: 353 XXXXXXXAGAITILLTDRNLNTSFFDPAG-----------GGDPILYQHLF*FFGHPEVY 499
+ + DR T FF P+G GG P+L+QHLF F+ HP VY
Sbjct: 237 AFALPVLTAGGFMQVADRLFGTCFFYPSGLVINNAAPTVGGGQPLLWQHLFWFYSHPAVY 296
Query: 500 ILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAY 679
I++LP G++S ++S +K F FIV HH+FT G++
Sbjct: 297 IMLLPIMGMVSDMLSC-MCRKPLFGYKPMVFSMSAIASLGFIVWGHHMFTSGMNPAVGMA 355
Query: 680 FTSATIIIAVPTGIKIFR*LATI 748
F +T++IA+P+ IK F ATI
Sbjct: 356 FMVSTMMIALPSAIKTFNWTATI 378
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 102 bits (244), Expect = 1e-20
Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 3/199 (1%)
Frame = +2
Query: 140 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 310
G T P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 311 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 490
P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF FFGHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402
Query: 491 EVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDT 670
EVY+LI+P FG I+ I+ ++ ++V HH++ VG+D +
Sbjct: 403 EVYVLIIPTFGFINMIVPHNNTRR-VASKHHMIWAIYVMAYMGYLVWGHHMYLVGLDHRS 461
Query: 671 RAYFTSATIIIAVPTGIKI 727
R +++ TI+I++P IK+
Sbjct: 462 RTMYSTITIMISMPATIKV 480
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 101 bits (243), Expect = 1e-20
Identities = 66/245 (26%), Positives = 108/245 (44%)
Frame = +2
Query: 11 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 190
L+P +LGA D+ FPR++ F V G + PPL++ G
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226
Query: 191 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 370
+ D + + IS+ + ++P+F A+ + A
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286
Query: 371 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQE 550
A +L +R + FF GGDP+L+QHLF FFGHPEVYI+ LP G++S I+
Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLPAAGMVSMIV-PT 345
Query: 551 RGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 730
+ F + HH+FT GI + ++F +A+ +A+P+G+++F
Sbjct: 346 MARTPLVGYRFVVLALVGTAFLSFGLWVHHMFTTGIPQLSLSFFQAASTAVAIPSGMQVF 405
Query: 731 R*LAT 745
+AT
Sbjct: 406 AWIAT 410
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 101 bits (242), Expect = 2e-20
Identities = 72/250 (28%), Positives = 112/250 (44%), Gaps = 2/250 (0%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 181
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G +L +L L+G+SS + ++PLFV TA
Sbjct: 139 YGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKVP--YLKMPLFVWGFFTTAILMIIA 196
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
+ +R T FFD A GG P+L+Q LF FFGHPEVYILILP G++S ++
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAMGLVSELL 256
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFI-V*AHHIFTVGIDIDTRAYFTSATIIIAVPTG 718
+ ++E F + V HH+FT + + ++ T+ IA+P+G
Sbjct: 257 -PKMARREIFGYTAIALSSIAIAFLSALGVWMHHMFTAIDNTLVQIVSSATTMAIAIPSG 315
Query: 719 IKIFR*LATI 748
+K+ AT+
Sbjct: 316 VKVLNWTATL 325
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 101 bits (241), Expect = 3e-20
Identities = 69/249 (27%), Positives = 102/249 (40%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN +PL LG D+A PR+N G T Y PL+ +
Sbjct: 99 GNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYPLTMDGNQ 158
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G SV + L+ G+ S ++P+F ++ T+
Sbjct: 159 TGVSVFMVAVILN--GLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSIFATSILQLLT 216
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
A + + L S F+P GG P+LYQ F F+ HP VY+++LP GI + +
Sbjct: 217 LGGLTAAALLTYLEIKLGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLPYLGIGAEVA 276
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
S +K F IV HH+F VGI + F +T+I+AVPTG+
Sbjct: 277 S-TMARKPLFGYRVMVYSMLAIVLVSCIVWLHHMFAVGIPEAWQIAFMISTLIVAVPTGV 335
Query: 722 KIFR*LATI 748
KIF + T+
Sbjct: 336 KIFNLIGTL 344
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 99.1 bits (236), Expect = 1e-19
Identities = 67/248 (27%), Positives = 106/248 (42%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 365 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 544
A+ +L DR L T FF GG+ +LY +LF +GHPEVY ++LP FG IS II
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGFISEII- 321
Query: 545 QERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIK 724
+K F + V HH FT+G +F++AT+++ +PTG+K
Sbjct: 322 PTFAEKPLFGYATMVIATFAIGGISWGVWLHHFFTMGAGPGINIFFSTATMLVGIPTGVK 381
Query: 725 IFR*LATI 748
+F T+
Sbjct: 382 VFNWALTL 389
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 98.7 bits (235), Expect = 1e-19
Identities = 61/246 (24%), Positives = 106/246 (43%)
Frame = +2
Query: 11 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 190
L+P +LGA D+ FPR++ + + + +G +YPPL++ G
Sbjct: 126 LLPALLGARDLPFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGL 183
Query: 191 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 370
D+ + L ++S + +PL+ V +
Sbjct: 184 GSDIWLLGLSFIEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPP 243
Query: 371 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQE 550
+ +R + FFDP GGDP+L+QHLF FGHPEVYI+ LP + + I+
Sbjct: 244 LIAGDLLFEMERGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLPLIALAAMIV-PT 302
Query: 551 RGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 730
++ F + HH+FT G+ + +F++A+ + +PTGI++F
Sbjct: 303 AARQPIVGYSWIVLSAVGTGFLSFGLWVHHMFTTGLPALSLGFFSAASEAVVIPTGIQLF 362
Query: 731 R*LATI 748
+AT+
Sbjct: 363 AFVATL 368
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 98.7 bits (235), Expect = 1e-19
Identities = 69/249 (27%), Positives = 108/249 (43%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN VP+++ D+A+P++N I F + T PP S I+
Sbjct: 87 GNYFVPIMVRYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISA 140
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
G + D+ IF L + GISS S Q+PL + ++
Sbjct: 141 PGPAADMWIFGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVA 200
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
A A+ +LLTDR + FF+PA GGDPI Y HLF F HPEVY+L++P G++ ++
Sbjct: 201 LPTFAAALLMLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGMMYEMV 260
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
+ +K + F AHH+F G+ + F T+ + +
Sbjct: 261 PR-FSRKPIYSYNSGLFAFVLLTIVGFSSWAHHMFATGMSFTEKTVFMLGTLAAVPASAM 319
Query: 722 KIFR*LATI 748
+F +AT+
Sbjct: 320 HVFNFVATM 328
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 91.5 bits (217), Expect = 2e-17
Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 16/256 (6%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--N 172
GN +P+ +GA D+AFPR N + F + +G +G T Y LS+
Sbjct: 111 GNYFLPIQIGAEDMAFPRFNMMSFWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGG 170
Query: 173 IAHRGRSVDLAIFSLHLA--GISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 346
A G + ++ + +A I+S S ++P+ A IT+
Sbjct: 171 DAGPGMAYGQTLWGISIAIFCIASLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSC 230
Query: 347 XXXXXXXXXAGAITILLTDRNLNTSFFDPAG-----------GGDPILYQHLF*FFGHPE 493
A +L DR TSFF P+G GG +L+QHLF FFGHPE
Sbjct: 231 IALLAFAVLLPACILLCLDRVAGTSFFIPSGLVFNDHVIPHGGGSALLWQHLFWFFGHPE 290
Query: 494 VYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTR 673
VYI ILP GI+SHI+ ++ ++V HH+F G++ +
Sbjct: 291 VYIAILPAMGIVSHILINSM-RRPLLSHRVVIGSMISIGFLSYVVWGHHMFVSGMNPLSS 349
Query: 674 AYFTSATIIIAVPTGI 721
F+ T+II +P +
Sbjct: 350 LVFSFPTLIITIPATV 365
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 90.2 bits (214), Expect = 5e-17
Identities = 64/249 (25%), Positives = 105/249 (42%), Gaps = 1/249 (0%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 184
N +PL++GA D+AFPR+N + + + T YPP S I H
Sbjct: 83 NYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-ITHG 141
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
+ FS+ L G +S +++L +FV A + AF
Sbjct: 142 NTA--FYTFSVLLLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAFVLQLIF 198
Query: 365 XXXAG-AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 541
G A+T+L D+ + T FFD A GGD + YQ+LF F+ HP VY++ LP ++ I+
Sbjct: 199 VPVLGTAVTMLTFDKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLPFMAMVFEIV 258
Query: 542 SQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGI 721
+ + V HH++ G+ R T++I++P G+
Sbjct: 259 ATFARNRVFNYKMVVYGGIGGIVLLSGEVWIHHLYVTGMPDWLRVGQMVTTVLISIPVGL 318
Query: 722 KIFR*LATI 748
+ + T+
Sbjct: 319 MVIGLVGTL 327
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 85.0 bits (201), Expect = 2e-15
Identities = 63/261 (24%), Positives = 105/261 (40%), Gaps = 13/261 (4%)
Frame = +2
Query: 5 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN--IA 178
N LVPL +GA D+AFPR+N + + G T+Y PL++ I
Sbjct: 89 NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYIP 148
Query: 179 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 358
G + +L + + +P+F ++ +T +
Sbjct: 149 GEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMMLF 208
Query: 359 XXXXXAGAITILLTDRNLNTSFF-----------DPAGGGDPILYQHLF*FFGHPEVYIL 505
A+ IL +D L T++F D G +L+ HLF FFGHPEVYI+
Sbjct: 209 AFAALLAALMILASDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLFWFFGHPEVYIV 268
Query: 506 ILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFT 685
P G+++ G++ F+V HH+F GI++ + F
Sbjct: 269 FFPALGVMAECFQTFTGRR-LVGRKWFIISMVLVALQSFVVWMHHMFLTGINLPIKTIFM 327
Query: 686 SATIIIAVPTGIKIFR*LATI 748
+ TI I++P + +F + T+
Sbjct: 328 ATTIGISLPFDLMVFSLIYTM 348
>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
Digenea|Rep: Cytochrome c oxidase subunit I -
Echinostoma hortense
Length = 154
Score = 83.8 bits (198), Expect = 4e-15
Identities = 38/85 (44%), Positives = 49/85 (57%)
Frame = +2
Query: 476 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 655
FFGHPEVY+LILP FGI+SHI F +V AHH+F VG
Sbjct: 1 FFGHPEVYVLILPVFGIVSHICMTFTNNDSLFGYYGLVLAMLAIVCLGSVVWAHHMFMVG 60
Query: 656 IDIDTRAYFTSATIIIAVPTGIKIF 730
D+ T +F+S T++I +PTGIK+F
Sbjct: 61 YDVHTAVFFSSVTMVIGIPTGIKVF 85
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 80.6 bits (190), Expect = 4e-14
Identities = 58/159 (36%), Positives = 69/159 (43%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
G L PL +GAP +A PR+ N+ F + G G VYPP SS +AH
Sbjct: 69 GXXLXPLXVGAPXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAH 128
Query: 182 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 361
+VDL IF LHLAGISS ++ LF
Sbjct: 129 SSGAVDLGIFXLHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILS 188
Query: 362 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 478
A AIT+L R N SFF P G P + F F
Sbjct: 189 XPVLAAAITMLXXXRXXNXSFFXPXXXGXPXXFPTFFXF 227
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 80.2 bits (189), Expect = 5e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +2
Query: 20 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 199
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 200 LAIFS 214
LAI+S
Sbjct: 61 LAIYS 65
Score = 59.7 bits (138), Expect = 8e-08
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +1
Query: 319 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 486
CM C +Y TCFS S+Y IIN K KY IF W P +STFILIFWT
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 79.0 bits (186), Expect = 1e-13
Identities = 65/247 (26%), Positives = 101/247 (40%), Gaps = 1/247 (0%)
Frame = +2
Query: 11 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 187
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 188 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 367
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 368 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQ 547
G +LL ++ S++ GG +++++LF +FGHPEVY+L+LPG G + +S
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGHPEVYLLLLPGTGAMFDYLS- 288
Query: 548 ERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKI 727
+ + +V HH F GI + T I++PT + I
Sbjct: 289 NLNHRPPYLKKWMIAAMGAISVDSVMVFLHHTFMTGIVFAWLMADSIFTETISIPTSMLI 348
Query: 728 FR*LATI 748
+AT+
Sbjct: 349 VGLIATM 355
>UniRef50_Q9XLV8 Cluster: Cytochrome c oxidase subunit I; n=1;
Diplonema papillatum|Rep: Cytochrome c oxidase subunit I
- Diplonema papillatum
Length = 287
Score = 73.7 bits (173), Expect = 4e-12
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = +2
Query: 494 VYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTR 673
VY++ILP FG++SH + + G + + V AHH+FTVG+D+DTR
Sbjct: 1 VYVIILPVFGLVSHSLHRG-GLFSLYNMLGMVYAMIAIAVVGYFVWAHHMFTVGLDVDTR 59
Query: 674 AYFTSATIIIAVPTGIKIF 730
YF+SAT++IA+PT IK+F
Sbjct: 60 VYFSSATLLIALPTSIKVF 78
>UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1;
Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 -
Harmonia axyridis (Multicolored Asian lady beetle)
Length = 193
Score = 73.3 bits (172), Expect = 6e-12
Identities = 30/57 (52%), Positives = 36/57 (63%)
Frame = +1
Query: 463 TFILIFWTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIHCLS 633
+ ++IFW+S SLYFN IWYNF YY+T K K W F NNLCY S W I +S
Sbjct: 2 SLVMIFWSSSSLYFNSPSIWYNFPYYYTSKSGKNCLWFFSNNLCYISYWTSSICSMS 58
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 70.9 bits (166), Expect = 3e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +2
Query: 158 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 337
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 338 TAFXXXXXXXXXAGAITILLTDR 406
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 62.5 bits (145), Expect = 1e-08
Identities = 30/55 (54%), Positives = 36/55 (65%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 166
GN LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+
Sbjct: 80 GNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
Score = 47.2 bits (107), Expect = 4e-04
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 650 VGIDIDTRAYFTSATIIIAVPTGIKIFR*LAT 745
VG+ + RAYFTSAT+IIA+PTGIK F LAT
Sbjct: 296 VGMXVXPRAYFTSATMIIAIPTGIKAFSWLAT 327
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 59.7 bits (138), Expect = 8e-08
Identities = 36/79 (45%), Positives = 43/79 (54%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 181
GN LVPL+LGAPD+AFPR+NN+ F + G + PL
Sbjct: 63 GNWLVPLMLGAPDMAFPRMNNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTIS 120
Query: 182 RGRSVDLAIFSLHLAGISS 238
G SVDLAIF LHLAG+SS
Sbjct: 121 AGPSVDLAIFPLHLAGVSS 139
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +2
Query: 116 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 238
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 58.4 bits (135), Expect = 2e-07
Identities = 31/70 (44%), Positives = 40/70 (57%)
Frame = +2
Query: 302 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 481
DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++ F
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71
Query: 482 GHPEVYILIL 511
GH +V LIL
Sbjct: 72 GHTDVLFLIL 81
>UniRef50_Q9TAP9 Cluster: Cytochrome c oxidase subunit I; n=2;
Toxoplasma gondii|Rep: Cytochrome c oxidase subunit I -
Toxoplasma gondii
Length = 192
Score = 55.6 bits (128), Expect = 1e-06
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +2
Query: 632 AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LAT 745
AHH+ TVG++ DTRAYF++ TI+IA+PTG KIF L T
Sbjct: 2 AHHMMTVGLEGDTRAYFSAMTIMIAIPTGTKIFNWLGT 39
>UniRef50_A2T428 Cluster: Putative uncharacterized protein ORF820;
n=1; Placozoan sp. BZ49|Rep: Putative uncharacterized
protein ORF820 - Placozoan sp. BZ49
Length = 820
Score = 54.8 bits (126), Expect = 2e-06
Identities = 23/30 (76%), Positives = 29/30 (96%)
Frame = +2
Query: 641 IFTVGIDIDTRAYFTSATIIIAVPTGIKIF 730
++ VG+D+DTRAYFT+AT+IIAVPTGIKIF
Sbjct: 1 MYVVGMDVDTRAYFTAATMIIAVPTGIKIF 30
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 54.8 bits (126), Expect = 2e-06
Identities = 29/58 (50%), Positives = 34/58 (58%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 175
GN LVP+++GAPD+AFPR+NNI F VE GAGTG TV LS I
Sbjct: 79 GNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLSQII 136
>UniRef50_Q8LX74 Cluster: Cytochrome c oxidase subunit I; n=1;
Chaoborus punctipennis|Rep: Cytochrome c oxidase subunit
I - Chaoborus punctipennis
Length = 205
Score = 54.0 bits (124), Expect = 4e-06
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +2
Query: 659 DIDTRAYFTSATIIIAVPTGIKIFR*LATI 748
D+DTRAYFTSAT+IIAVPTGIKIF LAT+
Sbjct: 1 DVDTRAYFTSATMIIAVPTGIKIFSWLATL 30
>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
Sub-unit I of an aa3-type cytochrome oxidase -
Thiobacillus ferrooxidans (Acidithiobacillus
ferrooxidans)
Length = 627
Score = 53.6 bits (123), Expect = 5e-06
Identities = 55/246 (22%), Positives = 86/246 (34%)
Frame = +2
Query: 11 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 190
L+PL+LG ++ FP++ + + G TG YPPL+ N G
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235
Query: 191 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 370
+ + ++S S ++P+FV + A
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295
Query: 371 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQE 550
+ L+D + F+ G P+ Y F F HPEVY+ ILP F I I+
Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFILPAFAIWLEIL-PA 353
Query: 551 RGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 730
K+ F + HH FT D F + T +++PTG
Sbjct: 354 AAKRPLFARGWAIAGLVGVSMSGAMSGVHHYFTAVSDA-RMPIFMTITETVSIPTGFIYL 412
Query: 731 R*LATI 748
+ TI
Sbjct: 413 SAIGTI 418
>UniRef50_Q9TCU2 Cluster: Cytochrome c oxidase subunit I; n=1;
Taenia saginata|Rep: Cytochrome c oxidase subunit I -
Taenia saginata (Beef tapeworm)
Length = 147
Score = 52.8 bits (121), Expect = 9e-06
Identities = 20/32 (62%), Positives = 28/32 (87%)
Frame = +2
Query: 635 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 730
HH+FTVG+D++T +F+S T+II VPTGIK+F
Sbjct: 53 HHMFTVGLDVNTAVFFSSVTMIIRVPTGIKVF 84
>UniRef50_Q8LX82 Cluster: Cytochrome c oxidase subunit I; n=3;
Chaoborus|Rep: Cytochrome c oxidase subunit I -
Chaoborus obscuripes
Length = 206
Score = 50.8 bits (116), Expect = 4e-05
Identities = 24/28 (85%), Positives = 26/28 (92%)
Frame = +2
Query: 662 IDTRAYFTSATIIIAVPTGIKIFR*LAT 745
+DTRAYFTSAT+IIAVPTGIKIF LAT
Sbjct: 2 VDTRAYFTSATMIIAVPTGIKIFSWLAT 29
>UniRef50_Q4XXN6 Cluster: Putative uncharacterized protein; n=1;
Plasmodium chabaudi|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 329
Score = 50.4 bits (115), Expect = 5e-05
Identities = 19/35 (54%), Positives = 29/35 (82%)
Frame = +2
Query: 641 IFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LAT 745
++T G+++DTRA+FTS TI+I++PTG K+F L T
Sbjct: 1 MYTTGLEVDTRAFFTSTTILISIPTGTKVFNWLCT 35
>UniRef50_Q6RCN4 Cluster: Cytochrome c oxidase subunit I; n=1;
Bucephalid sp. KH-2004|Rep: Cytochrome c oxidase subunit
I - Bucephalid sp. KH-2004
Length = 121
Score = 50.0 bits (114), Expect = 6e-05
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +2
Query: 623 IV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIF 730
+V HH+F VG D+ T +F+S T+II VPTGIK+F
Sbjct: 26 VVWLHHMFMVGFDVKTAVFFSSVTMIIGVPTGIKVF 61
>UniRef50_Q8LX70 Cluster: Cytochrome c oxidase subunit I; n=4;
Chaoborus|Rep: Cytochrome c oxidase subunit I -
Chaoborus crystallinus (Phantom midge) (Tipula
crystallina)
Length = 207
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = +2
Query: 656 IDIDTRAYFTSATIIIAVPTGIKIFR*LATI 748
+ + TRAYFTSAT+IIAVPTGIKIF LAT+
Sbjct: 1 LTLHTRAYFTSATMIIAVPTGIKIFSWLATL 31
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 48.8 bits (111), Expect = 1e-04
Identities = 27/58 (46%), Positives = 33/58 (56%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 175
GN L+PL+LGA D+AF R+NNI F +VE GAGTG TV SS +
Sbjct: 85 GNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 48.0 bits (109), Expect = 2e-04
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 151
GN VP+++G+PD+AFPR+NNI F +VE G G+G TV
Sbjct: 83 GNWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.0 bits (109), Expect = 2e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +1
Query: 322 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 474
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +2
Query: 2 GN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 151
GN L+PL++GA D++F R+NNI F +VE+GAGTG TV
Sbjct: 80 GNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_Q9MFX8 Cluster: Cytochrome oxidase I; n=5; Echinometra
lucunter|Rep: Cytochrome oxidase I - Echinometra
lucunter
Length = 199
Score = 46.4 bits (105), Expect = 8e-04
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +1
Query: 463 TFILIFWTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIHCLSSSY 642
T ILI W S+Y F IW +F+ T FW+ N L + SNW I C+S +
Sbjct: 1 TPILILWPPSSIYSYFAGIWNDFARNRTLFSNASTFWVPGNGLRHDSNWSPSIPCMSPPH 60
Query: 643 IH 648
+H
Sbjct: 61 VH 62
>UniRef50_Q5VI63 Cluster: SoxB; n=3; Sulfolobaceae|Rep: SoxB -
Acidianus brierleyi
Length = 148
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/84 (27%), Positives = 40/84 (47%)
Frame = +2
Query: 476 FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVG 655
FFGHP VY + P FG + + I K+ F ++ HH+ T
Sbjct: 2 FFGHPVVYYVPFPLFGALYYYI-PIYAKRSLFSEKWARWNIFLLAIGSMLIWVHHLQTFP 60
Query: 656 IDIDTRAYFTSATIIIAVPTGIKI 727
+ +D RA+ T +T+++A +G+ +
Sbjct: 61 LPVDLRAWITVSTLVLASGSGLTV 84
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 44.0 bits (99), Expect = 0.004
Identities = 34/123 (27%), Positives = 41/123 (33%)
Frame = +1
Query: 49 PTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYFFTTFSX 228
P NK +KIL TPL Y N C K C + +NSLP Y T R +F T
Sbjct: 79 PPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCS 138
Query: 229 XXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXXXTTCFSWSYYNIINRSK 408
CM +YS + S+YNI K
Sbjct: 139 SVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSPSIGSSHYNITYWPK 198
Query: 409 LKY 417
KY
Sbjct: 199 PKY 201
>UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7;
Locustacarus buchneri|Rep: Cytochrome oxidase subunit 1
- Locustacarus buchneri
Length = 185
Score = 43.2 bits (97), Expect = 0.007
Identities = 29/92 (31%), Positives = 43/92 (46%)
Frame = +1
Query: 334 DYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFT 513
+Y+ TT S S +N N SKL++I+ S PN I ILI T L+ N T
Sbjct: 94 NYNNTTDYFTTSSSRSNHNTTNSSKLQHILLRSFGGSGPNPIPASILILRTPSGLHSNST 153
Query: 514 RIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNW 609
I ++ +K N ++NNL ++ W
Sbjct: 154 SIRNRITHLHNIFSQKSNILYYKNNLRHSIYW 185
>UniRef50_P98004 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Cytochrome aa3 subunit
1) (Oxidase aa(3) subunit 1); n=5; Sulfolobaceae|Rep:
Quinol oxidase subunit 1 (EC 1.10.3.-) (Quinol oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Oxidase aa(3)
subunit 1) - Sulfolobus acidocaldarius
Length = 517
Score = 40.7 bits (91), Expect = 0.037
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = +2
Query: 452 ILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV* 631
+L+ LF F+GHP VY + P FG + + I Q G + + V
Sbjct: 224 LLWAILFWFYGHPVVYYVPFPLFGALYYYIPQYAG-RSLYSEKWARWNIYLLAIGTMGVW 282
Query: 632 AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKI 727
HH+ T + I R + +T+I+A +G+ +
Sbjct: 283 VHHLQTWPLPIVLREWVNLSTLILATGSGLTV 314
>UniRef50_Q9TAP7 Cluster: Cytochrome oxidase subunit 1; n=1;
Clonorchis sinensis|Rep: Cytochrome oxidase subunit 1 -
Clonorchis sinensis
Length = 120
Score = 39.5 bits (88), Expect = 0.086
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = -1
Query: 738 SHLKILIPVGTAIIIVAEVKYARVSISIPTVNI**AQT 625
+H K LIPVGT +I+V E+K V S PTVN+ AQT
Sbjct: 57 NHEKTLIPVGTPMIMVTELKKTAVPKSSPTVNMWWAQT 94
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 37.1 bits (82), Expect = 0.46
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +2
Query: 185 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 364
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 365 XXXAGAITILLTDRNLNT 418
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
Roseiflexus sp. RS-1
Length = 561
Score = 35.5 bits (78), Expect = 1.4
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 440 GGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERG 556
G DP+L + LF F GHP VY +LP + + + Q+ G
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAYISWYNFVPQQAG 262
>UniRef50_Q9YBH5 Cluster: Cytochrome c oxidase (Ba3-type) subunit I;
n=1; Aeropyrum pernix|Rep: Cytochrome c oxidase
(Ba3-type) subunit I - Aeropyrum pernix
Length = 548
Score = 35.1 bits (77), Expect = 1.9
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = +2
Query: 446 DPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFI 625
D +L + LF +FGHP VY +LP + + I + G F
Sbjct: 207 DVLLARTLFWWFGHPLVYFWLLPAVALWYYAIPRILG-VPLFSETMAKVAYILYMIASTP 265
Query: 626 V*AHHIFT-VGIDIDTRAYFTSATIIIAVPTGIKIFR*LATI 748
V HH F GI + T T ++A P+ + F LAT+
Sbjct: 266 VGLHHQFVDPGIGPFFKLVHTLVTFVVATPSMLTAFNILATL 307
>UniRef50_Q8ZXC1 Cluster: Cytochrome C oxidase subunit I; n=3;
Pyrobaculum|Rep: Cytochrome C oxidase subunit I -
Pyrobaculum aerophilum
Length = 557
Score = 35.1 bits (77), Expect = 1.9
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = +2
Query: 446 DPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFI 625
D + ++ F FFGHP VY ++P I I+ + G E F
Sbjct: 206 DVLEWRLWFWFFGHPLVYFWLVPAVTIWYTILPRVLG-TEVFSKTAAKAAFMLYLIASVP 264
Query: 626 V*AHHIFT-VGIDIDTRAYFTSATIIIAVPTGIKIFR*LATI 748
V HH F G+ + T T ++AVP+ I F +AT+
Sbjct: 265 VGLHHQFVDPGVHPVYKYLHTVLTYLVAVPSFITAFNVIATL 306
>UniRef50_Q2Y5N3 Cluster: Integral membrane proteins containing
uncharacterized repeats-like precursor; n=3;
Nitrosospira multiformis ATCC 25196|Rep: Integral
membrane proteins containing uncharacterized
repeats-like precursor - Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849)
Length = 433
Score = 34.7 bits (76), Expect = 2.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 488 PEVYILILPGFGIISHIISQERGKK 562
PE+Y LILPG G++ I Q++ KK
Sbjct: 407 PEIYALILPGLGLVGFIARQKKAKK 431
>UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 592
Score = 34.7 bits (76), Expect = 2.5
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +2
Query: 446 DPILYQHLF*FFGHPEVYILILPGFGIISHI---ISQERGK 559
+P+L + LF FFGHP VY +LP + + I I E+GK
Sbjct: 209 NPLLARTLFWFFGHPVVYFWLLPAYVALYTILPKIVSEKGK 249
>UniRef50_Q48874 Cluster: SakB; n=2; Lactobacillus sakei|Rep: SakB -
Lactobacillus sakei
Length = 430
Score = 33.1 bits (72), Expect = 7.5
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +1
Query: 439 RRRPNFISTFILIFWTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIR 618
RRR FI+ F I + +LY + + + S YF K KK N +L N+L + + +
Sbjct: 35 RRRVLFIAVFFPITFLV-ALYSDISNVIPILSGYFILKEKKENDYLLLNDLLFCTFIIFG 93
Query: 619 IHCLSSS 639
+ LSS+
Sbjct: 94 CNVLSSN 100
>UniRef50_Q5CTJ9 Cluster: Cation-transporting ATPase; n=2;
Cryptosporidium|Rep: Cation-transporting ATPase -
Cryptosporidium parvum Iowa II
Length = 1434
Score = 33.1 bits (72), Expect = 7.5
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 466 FILIFWT--S*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIHCLSSS 639
+I+ FW+ S SLYFN + N + T KK N L + +C+ + + S +
Sbjct: 558 YIIPFWSTSSMSLYFNNAIKYLNSEHILTTNPKKLNQLLLVDTICFDKTGTLTVPTFSIN 617
Query: 640 YIH 648
+H
Sbjct: 618 NVH 620
>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1420
Score = 32.7 bits (71), Expect = 9.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 405 RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 283
+++NN +I S NNN N++ T TN + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078
>UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3;
n=1; Candida albicans|Rep: Putative uncharacterized
protein CLN3 - Candida albicans (Yeast)
Length = 785
Score = 32.7 bits (71), Expect = 9.9
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -1
Query: 459 YKIGSPPPAGSKNDVFKFRSVNN---IVIAPAKTGSDNNNKNAVIPTAH 322
Y++ +PP + +KN K S NN IA T ++NNN N+ +P H
Sbjct: 572 YQMVTPPNSANKNSN-KSNSANNNNTTTIATTTTTTNNNNNNSQLPAPH 619
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,113,006
Number of Sequences: 1657284
Number of extensions: 9856164
Number of successful extensions: 23701
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 21773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23382
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -