Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0609
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 57 3e-09
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 56 6e-09
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 30 0.34
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 27 3.2
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 26 4.2
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 26 5.6
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 25 7.4
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 25 9.8
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 25 9.8
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.8
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 56.8 bits (131), Expect = 3e-09
Identities = 24/45 (53%), Positives = 32/45 (71%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFL+FH LL+ERL+++YGKKS L+F++YPAPQV
Sbjct: 137 QGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQV 181
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 55.6 bits (128), Expect = 6e-09
Identities = 24/45 (53%), Positives = 32/45 (71%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFL+FH LL+ERL+++Y KKSKL+F++YPAPQV
Sbjct: 133 QGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQV 177
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 29.9 bits (64), Expect = 0.34
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 263 LGQVPATHLSNVCLINFRW*F---LRLPWLSRVTGNQGSIPEREPEKRLP 403
LG + L C+IN W LRL +L + NQ S E++ EKR+P
Sbjct: 259 LGMDSSCSLVAECMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 332 LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKN 469
+P +S V + IPER+ + L P + H EVV +N
Sbjct: 757 VPCISGVMLHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQN 802
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -3
Query: 510 LIPITRPRKSPVSLFFVTTSPCREWVICAPAAFL 409
+IPI + KS +SL F+T SPC + IC+ A L
Sbjct: 45 IIPIAQ--KSNISLPFLTLSPC-SFTICSLRARL 75
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 412 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 314
P MW P N+ + YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 410 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 309
L ++ S+ P + PD P T+ V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 25.0 bits (52), Expect = 9.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 553 GVEDQESLLKYLKCTHSDYEAS 488
G+ D+E++ + LK H DY +S
Sbjct: 29 GLSDEEAIHEQLKLYHEDYNSS 50
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ 661
+GF + H L+ERL+ Y KK ++++P Q
Sbjct: 133 EGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQ 176
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 63 NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 167
N IY+ +F ++S++ + + I L +RT++SD
Sbjct: 14 NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,620
Number of Sequences: 5004
Number of extensions: 58606
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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