Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0609
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 57 1e-08
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 57 1e-08
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 57 1e-08
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 54 8e-08
09_01_0019 + 403078-404211 31 1.1
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 30 1.9
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 30 1.9
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 30 1.9
03_01_0034 + 318432-318825,318902-319851 30 1.9
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 30 1.9
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 30 1.9
12_01_0861 + 8153108-8153266,8154633-8155136 29 2.5
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 29 3.3
08_01_1002 + 10171942-10172859,10173369-10173452 28 5.8
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 28 7.7
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 28 7.7
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/45 (60%), Positives = 31/45 (68%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFL+F+ LL+ERLSVDYGKKSKL F IYP+PQV
Sbjct: 133 QGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQV 177
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFL+F+ LL+ERLSVDYGKKSKL F +YP+PQV
Sbjct: 133 QGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV 177
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFL+F+ LL+ERLSVDYGKKSKL F +YP+PQV
Sbjct: 133 QGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV 177
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 54.4 bits (125), Expect = 8e-08
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ 661
QGFL+F+ LL+ERLSVDYG+KSKL F IYP+PQ
Sbjct: 193 QGFLVFNAVGGGTGSGLGSLLLERLSVDYGRKSKLGFTIYPSPQ 236
>09_01_0019 + 403078-404211
Length = 377
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 355 GESGFDSGEGA*ETATTSKEGSRRANYPLPARGGSDEK*RYG 480
G S DSG GA ++A K SRR + GSD R+G
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSDGDERHG 362
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 311 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 355
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
>12_01_0861 + 8153108-8153266,8154633-8155136
Length = 220
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -1
Query: 479 PYRYFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 324
P SS P G RL S +VA+ + P P S+P D P TT+ + E
Sbjct: 94 PRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = -1
Query: 464 SSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLKD 285
SS PP S +RL + S AP P + +P P + V ++ I S G +L
Sbjct: 6 SSKPPTPASTPSSRLAAAPSSRVSSAAPHPSPSSSAPTPASRTVYSDRFIPSRAGSNL-- 63
Query: 284 ASPVLDQAICKSYPDSSKLTTSDARP 207
+ D A S+ D++ S P
Sbjct: 64 --ALFDLAPSPSHHDAAAAAASPGAP 87
>08_01_1002 + 10171942-10172859,10173369-10173452
Length = 333
Score = 28.3 bits (60), Expect = 5.8
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +2
Query: 206 RASRPKSLILMN--LDNFCRSLGQVPATHLSNVCLINF--RW*FLRLPWL-SRVTGNQGS 370
RA + SL L +DN CR G++P + +N+ + F FL WL SRV + S
Sbjct: 242 RAPKLHSLTLWTPAVDNGCRVAGELPLLNAANISVDAFLGTEDFLDTLWLVSRVKVLKFS 301
Query: 371 IPEREPEK 394
+ +RE K
Sbjct: 302 VRDRENRK 309
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 533 GFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
GF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 148 GFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 191
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 533 GFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
GF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 153 GFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,771,948
Number of Sequences: 37544
Number of extensions: 416898
Number of successful extensions: 1104
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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