Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0609
(665 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 67 1e-11
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 67 1e-11
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 67 1e-11
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_59740| Best HMM Match : Tubulin (HMM E-Value=2.1e-25) 67 1e-11
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 67 1e-11
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 67 1e-11
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 66 2e-11
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 6e-11
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 63 2e-10
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.052
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 31 1.1
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 31 1.1
SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05) 30 1.5
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 28 7.9
SB_28897| Best HMM Match : Trypsin (HMM E-Value=0) 28 7.9
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/45 (73%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFAIYPAPQV
Sbjct: 132 QGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV 176
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/45 (73%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFAIYPAPQV
Sbjct: 133 QGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQV 177
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/45 (73%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFAIYPAPQV
Sbjct: 566 QGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQV 610
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/45 (73%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFAIYPAPQV
Sbjct: 718 QGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQV 762
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/45 (71%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFAIYPAPQ+
Sbjct: 197 QGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQI 241
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/45 (71%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFAIYPAPQ+
Sbjct: 70 QGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQI 114
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/45 (71%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFAIYPAPQ+
Sbjct: 937 QGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQI 981
Score = 64.9 bits (151), Expect = 6e-11
Identities = 31/45 (68%), Positives = 32/45 (71%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFAIYPAP +
Sbjct: 504 QGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPHI 548
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/45 (71%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFAIYPAPQ+
Sbjct: 133 QGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQI 177
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/45 (71%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFAIYPAPQ+
Sbjct: 118 QGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQI 162
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/45 (66%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFL+FH LL+ERLSVDYGKKSKLEFAIYPAPQ+
Sbjct: 551 QGFLVFHSFGGGTGSGFSALLLERLSVDYGKKSKLEFAIYPAPQI 595
>SB_59740| Best HMM Match : Tubulin (HMM E-Value=2.1e-25)
Length = 139
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/45 (71%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFAIYPAPQ+
Sbjct: 8 QGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQI 52
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/45 (71%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFAIYPAPQ+
Sbjct: 58 QGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQI 102
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/45 (71%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFAIYPAPQ+
Sbjct: 133 QGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQI 177
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/45 (68%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ+
Sbjct: 98 QGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQI 142
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/45 (68%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ+
Sbjct: 58 QGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQI 102
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 64.9 bits (151), Expect = 6e-11
Identities = 29/45 (64%), Positives = 33/45 (73%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFL+FH LLMERLSVDYGK+SKLEFA+YPAPQ+
Sbjct: 264 QGFLVFHSFGGGTGSGFSSLLMERLSVDYGKRSKLEFAVYPAPQI 308
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/45 (64%), Positives = 31/45 (68%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF IFH LLMERLSVDYGKKSKLEFA+YPAP +
Sbjct: 123 QGFFIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPHI 167
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/45 (60%), Positives = 30/45 (66%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFLIFH L+ E LSVDYGKKSKLEFA+YPAP +
Sbjct: 1044 QGFLIFHSFGGGTGSGFASLITEHLSVDYGKKSKLEFAVYPAPHI 1088
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -1
Query: 407 DVVAVSQAPSPESNPDSPLPVTTM 336
DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = -1
Query: 398 AVSQAPSPESNPDSPLPVTTM 336
AVSQAPSPESNP+SP PV TM
Sbjct: 52 AVSQAPSPESNPNSPSPVVTM 72
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = -2
Query: 397 PFLRLPLRNRTLIPRYP 347
PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 5 CLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 130
CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 450 CLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 5 CLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 130
CL D A+ ++ + +Y W+N+ +LV L ++ CG+S
Sbjct: 869 CLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910
>SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)
Length = 576
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -1
Query: 662 PEARGRWRTPV*TSCRSQRRDAPSIRK*TQSRYLHRRSGRSGILVKIFKVYSF 504
P A R +TP TSC+ +R+ PSI + + +R+G ILV +VY +
Sbjct: 303 PLAISRQQTPPFTSCQLVQREQPSINYLVRRVTVCQRTGDIAILVGDGEVYIY 355
>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +1
Query: 4 LSQRLSHACLSASRIKAIPRMA 69
LSQRLSHACLS S RMA
Sbjct: 140 LSQRLSHACLSISTCTVKLRMA 161
>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +1
Query: 4 LSQRLSHACLSASRIKAIPRMA 69
LSQRLSHACLS S RMA
Sbjct: 116 LSQRLSHACLSISTRTVKLRMA 137
>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 441
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 416 PSLDVVAVSQAPSPESNPDSPLP 348
P+ DV+A Q P P S D PLP
Sbjct: 75 PAEDVMAAHQEPKPTSAIDQPLP 97
>SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 974
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 650 GRWRTPV*TSCRSQRRDAPSIRK*TQSRYLHRRSGRS-GILVKIFKVYSFRLRG 492
GRWR P SC+ +R R T + L S R+ G LV+ V + L G
Sbjct: 330 GRWRPPAVPSCKKERCSKECKRLTTPAHALMGGSSRNVGSLVRFVCVSGYVLIG 383
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,126,322
Number of Sequences: 59808
Number of extensions: 451760
Number of successful extensions: 1166
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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