Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0609
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40420-4|AAA81432.2|  456|Caenorhabditis elegans Tubulin, alpha ...    65   4e-11
U65429-1|AAB48241.1|  450|Caenorhabditis elegans alpha-tubulin M...    64   6e-11
D21134-1|BAA22203.1|  449|Caenorhabditis elegans alpha-3 tubulin...    64   6e-11
AF003387-1|AAB54263.2|  450|Caenorhabditis elegans Mechanosensor...    64   6e-11
AB017190-1|BAA32600.1|  450|Caenorhabditis elegans Alpha tubulin...    64   6e-11
Z99709-10|CAB16856.1|  448|Caenorhabditis elegans Hypothetical p...    64   9e-11
Z81070-8|CAB03001.1|  449|Caenorhabditis elegans Hypothetical pr...    64   9e-11
Z37092-12|CAA85463.1|  448|Caenorhabditis elegans Hypothetical p...    64   9e-11
D16439-1|BAA03909.1|  449|Caenorhabditis elegans alpha-1 tubulin...    64   9e-11
D14965-1|BAA03610.1|  448|Caenorhabditis elegans alpha-2 tubulin...    64   9e-11
AL023832-2|CAA19476.1|  448|Caenorhabditis elegans Hypothetical ...    64   9e-11
Z78062-1|CAB01495.1|  447|Caenorhabditis elegans Hypothetical pr...    63   2e-10
Z37140-7|CAA85497.2|  452|Caenorhabditis elegans Hypothetical pr...    62   3e-10
Z81523-9|CAB04246.2|  464|Caenorhabditis elegans Hypothetical pr...    61   8e-10
AB017191-1|BAA32601.1|  435|Caenorhabditis elegans alpha tubulin...    61   8e-10
Z81134-1|CAB03447.1|  444|Caenorhabditis elegans Hypothetical pr...    60   2e-09
AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   5.2  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U40420-4|AAA81432.2|  456|Caenorhabditis elegans Tubulin, alpha
           protein 9 protein.
          Length = 456

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 31/45 (68%), Positives = 32/45 (71%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGFL+FH            LLMERLSVDYGKKSKLEF IYPAPQV
Sbjct: 138 QGFLVFHSFGGGTGSGFTALLMERLSVDYGKKSKLEFCIYPAPQV 182


>U65429-1|AAB48241.1|  450|Caenorhabditis elegans alpha-tubulin
           MEC-12 protein.
          Length = 450

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 30/45 (66%), Positives = 33/45 (73%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGFL+FH            LLMERLSVDYGKK+KLEF+IYPAPQV
Sbjct: 133 QGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKAKLEFSIYPAPQV 177


>D21134-1|BAA22203.1|  449|Caenorhabditis elegans alpha-3 tubulin
           protein.
          Length = 449

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 30/45 (66%), Positives = 33/45 (73%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGFL+FH            LLMERLSVDYGKK+KLEF+IYPAPQV
Sbjct: 132 QGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKAKLEFSIYPAPQV 176


>AF003387-1|AAB54263.2|  450|Caenorhabditis elegans Mechanosensory
           abnormality protein12 protein.
          Length = 450

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 30/45 (66%), Positives = 33/45 (73%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGFL+FH            LLMERLSVDYGKK+KLEF+IYPAPQV
Sbjct: 133 QGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKAKLEFSIYPAPQV 177


>AB017190-1|BAA32600.1|  450|Caenorhabditis elegans Alpha tubulin
           (tba-3) protein.
          Length = 450

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 30/45 (66%), Positives = 33/45 (73%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGFL+FH            LLMERLSVDYGKK+KLEF+IYPAPQV
Sbjct: 133 QGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKAKLEFSIYPAPQV 177


>Z99709-10|CAB16856.1|  448|Caenorhabditis elegans Hypothetical
           protein C47B2.3 protein.
          Length = 448

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 30/45 (66%), Positives = 32/45 (71%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGF +FH            LLMERLSVDYGKKSKLEF+IYPAPQV
Sbjct: 131 QGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 175


>Z81070-8|CAB03001.1|  449|Caenorhabditis elegans Hypothetical
           protein F26E4.8 protein.
          Length = 449

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 30/45 (66%), Positives = 32/45 (71%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGF +FH            LLMERLSVDYGKKSKLEF+IYPAPQV
Sbjct: 131 QGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 175


>Z37092-12|CAA85463.1|  448|Caenorhabditis elegans Hypothetical
           protein F44F4.11 protein.
          Length = 448

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 30/45 (66%), Positives = 32/45 (71%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGF +FH            LLMERLSVDYGKKSKLEF+IYPAPQV
Sbjct: 131 QGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 175


>D16439-1|BAA03909.1|  449|Caenorhabditis elegans alpha-1 tubulin
           protein.
          Length = 449

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 30/45 (66%), Positives = 32/45 (71%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGF +FH            LLMERLSVDYGKKSKLEF+IYPAPQV
Sbjct: 131 QGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 175


>D14965-1|BAA03610.1|  448|Caenorhabditis elegans alpha-2 tubulin
           protein.
          Length = 448

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 30/45 (66%), Positives = 32/45 (71%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGF +FH            LLMERLSVDYGKKSKLEF+IYPAPQV
Sbjct: 131 QGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 175


>AL023832-2|CAA19476.1|  448|Caenorhabditis elegans Hypothetical
           protein F44F4.11 protein.
          Length = 448

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 30/45 (66%), Positives = 32/45 (71%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGF +FH            LLMERLSVDYGKKSKLEF+IYPAPQV
Sbjct: 131 QGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 175


>Z78062-1|CAB01495.1|  447|Caenorhabditis elegans Hypothetical
           protein F16D3.1 protein.
          Length = 447

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/45 (62%), Positives = 33/45 (73%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGFLIFH            L+MERLS+DYGKK+KLEF+IYPAPQ+
Sbjct: 133 QGFLIFHSFGGGTGSGFTSLVMERLSIDYGKKAKLEFSIYPAPQI 177


>Z37140-7|CAA85497.2|  452|Caenorhabditis elegans Hypothetical
           protein ZK899.4 protein.
          Length = 452

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 28/45 (62%), Positives = 33/45 (73%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGFL+FH            LLMERLSV++GKKSKLEF++YPAPQV
Sbjct: 136 QGFLVFHSFGGGTGSGFSSLLMERLSVEFGKKSKLEFSVYPAPQV 180


>Z81523-9|CAB04246.2|  464|Caenorhabditis elegans Hypothetical
           protein F32H2.9 protein.
          Length = 464

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 29/45 (64%), Positives = 31/45 (68%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGF+IFH            LLMERLS +YGKK KLEFAIYPAPQV
Sbjct: 139 QGFVIFHSFGGGTGSGFLSLLMERLSTEYGKKPKLEFAIYPAPQV 183


>AB017191-1|BAA32601.1|  435|Caenorhabditis elegans alpha tubulin
           (tba-6) protein.
          Length = 435

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 29/45 (64%), Positives = 31/45 (68%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGF+IFH            LLMERLS +YGKK KLEFAIYPAPQV
Sbjct: 111 QGFVIFHSFGGGTGSGFLSLLMERLSTEYGKKPKLEFAIYPAPQV 155


>Z81134-1|CAB03447.1|  444|Caenorhabditis elegans Hypothetical
           protein T28D6.2 protein.
          Length = 444

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 26/45 (57%), Positives = 31/45 (68%)
 Frame = +2

Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
           QGF +FH            +LMERLS +YGKKSKLEF+IYPAPQ+
Sbjct: 130 QGFFVFHSFGGGTGSGFTSMLMERLSAEYGKKSKLEFSIYPAPQI 174


>AC006810-8|AAK84621.1|  364|Caenorhabditis elegans Hypothetical
           protein Y5H2B.1 protein.
          Length = 364

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 221 KSLILMNLDNFCRSLGQVPATHLSNVCLINFRW*FLRLPWLS 346
           K L + N   +C  + +V    ++ +C+I F W F +L +++
Sbjct: 8   KFLTINNFSRYCLKIVKVHIIWITIICIIYFNWRFKKLDFMA 49


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 419 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI-ES**GRHLKDASPVLDQAICKSYP 243
           +P+  V+  ++ PS +S     + VTT  V+ TTI  S         + V   A   + P
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTITTSTPPSTTSPTTTVTPVATSSATP 618

Query: 242 DSSKLTTS 219
             SK TT+
Sbjct: 619 KPSKRTTT 626


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 54  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 158
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 436 GNLRACCLPWMW*PFLRLPLR 374
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


>Z66494-3|CAA91258.2|  520|Caenorhabditis elegans Hypothetical
           protein C34C6.3 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 96  SYSVTWITVVILELIHAIRTLTSDGMS 176
           SY+V+WIT       + IR + SDG++
Sbjct: 54  SYNVSWITPAASNSTYRIRLIDSDGLT 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,256,261
Number of Sequences: 27780
Number of extensions: 322071
Number of successful extensions: 875
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)