Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0609
(665 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 57 9e-09
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 57 9e-09
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 57 1e-08
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 57 1e-08
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 57 1e-08
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 57 1e-08
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 56 3e-08
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 1.2
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 30 1.6
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 30 1.6
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 30 1.6
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 30 1.6
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 30 1.6
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 30 1.6
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 29 2.8
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 29 2.8
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont... 29 2.8
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 29 2.8
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 29 3.7
At5g18740.1 68418.m02224 expressed protein predicted proteins - ... 28 6.4
At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putati... 27 8.5
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 57.2 bits (132), Expect = 9e-09
Identities = 27/45 (60%), Positives = 31/45 (68%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFL+F+ LL+ERLSVDYGKKSKL F IYP+PQV
Sbjct: 133 QGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQV 177
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 57.2 bits (132), Expect = 9e-09
Identities = 27/45 (60%), Positives = 31/45 (68%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFL+F+ LL+ERLSVDYGKKSKL F IYP+PQV
Sbjct: 133 QGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQV 177
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFL+F+ LL+ERLSVDYGKKSKL F +YP+PQV
Sbjct: 133 QGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV 177
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFL+F+ LL+ERLSVDYGKKSKL F +YP+PQV
Sbjct: 133 QGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV 177
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFL+F+ LL+ERLSVDYGKKSKL F +YP+PQV
Sbjct: 133 QGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV 177
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFL+F+ LL+ERLSVDYGKKSKL F +YP+PQV
Sbjct: 133 QGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV 177
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/45 (57%), Positives = 31/45 (68%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGFL+F+ LL+ERLSVD+GKKSKL F IYP+PQV
Sbjct: 133 QGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQV 177
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 242 DSSKLTTSDARPSVDWF*SNKSTHPITGQSSD 147
DS S RPS+DWF N+S + + SS+
Sbjct: 223 DSDLSFVSSDRPSMDWFEDNRSNYATSSSSSE 254
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 175
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 132 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 176
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + L F+++P+P+V
Sbjct: 132 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV 176
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + + F+++P+P+V
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV 175
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + + F+++P+P+V
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV 175
>At3g17920.1 68416.m02282 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 962
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = -1
Query: 425 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE---TTIES**GRHLKDASPVLDQAIC 255
RLLPSL VV+ +P+ + P S LP + + V E + + + L + L++ IC
Sbjct: 84 RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLELRGCDLSTSSAKGLLELRHTLEKLIC 143
Query: 254 KSYPDS 237
+ D+
Sbjct: 144 HNSTDA 149
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +2
Query: 530 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQV 664
QGF + H LL+ ++ +Y + + F+++P+P+V
Sbjct: 131 QGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV 175
>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
to gi_3883128_gb_AAC77827
Length = 133
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 416 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 309
PS A + APSP +NP P T V++ ES
Sbjct: 39 PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74
>At5g18740.1 68418.m02224 expressed protein predicted proteins -
Arabidopsis thaliana; expression supported by MPSS
Length = 609
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = -1
Query: 566 YLHRRSGRSGILVKIFKVYSFRLRGLVRVPYRYFSSLPPRAGSG*FARLLPSLDVVAVSQ 387
YLH+ G + + +++ Y R L R YR+ +P +G + +P D + Q
Sbjct: 339 YLHKAKGFASVFLRMGTGYEGIFRILPRSLYRFSHRVPSFKLTGVKGKDMPK-DAYELDQ 397
Query: 386 APSPESNPDSPLP 348
A PE+ + +P
Sbjct: 398 AALPETIEEIIVP 410
>At1g72560.1 68414.m08391 tRNA export mediator exportin-t, putative
(PAUSED) contains Pfam profile: PF04150 exportin-t,
identical to PAUSED gi:30909318
Length = 988
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -2
Query: 271 LTKRSAKVIQIHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACISSRITTVIQ 110
LT + +V++ H+ RL + ++ DL+ ++PS+ V+ C +++Q
Sbjct: 304 LTGYAVEVLECHK--RLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTFSIVQ 355
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,704,135
Number of Sequences: 28952
Number of extensions: 317517
Number of successful extensions: 742
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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