Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0607
(650 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O97159 Cluster: Chromodomain-helicase-DNA-binding prote... 261 1e-68
UniRef50_Q14839-2 Cluster: Isoform 2 of Q14839 ; n=19; Euteleost... 232 6e-60
UniRef50_Q8TDI0 Cluster: Chromodomain-helicase-DNA-binding prote... 230 3e-59
UniRef50_Q4SNF1 Cluster: Chromosome 8 SCAF14543, whole genome sh... 228 8e-59
UniRef50_Q12873 Cluster: Chromodomain-helicase-DNA-binding prote... 223 3e-57
UniRef50_Q22516 Cluster: Chromodomain-helicase-DNA-binding prote... 180 2e-44
UniRef50_Q4T5L7 Cluster: Chromosome undetermined SCAF9199, whole... 131 2e-29
UniRef50_Q9S775 Cluster: CHD3-type chromatin-remodeling factor P... 76 8e-13
UniRef50_A7P5Y1 Cluster: Chromosome chr4 scaffold_6, whole genom... 71 2e-11
UniRef50_A5BRA6 Cluster: Putative uncharacterized protein; n=2; ... 69 1e-10
UniRef50_A2YA18 Cluster: Putative uncharacterized protein; n=2; ... 60 6e-08
UniRef50_UPI000034F14B Cluster: chromatin remodeling factor, put... 58 2e-07
UniRef50_Q9SZ57 Cluster: Putative uncharacterized protein AT4g31... 46 6e-04
UniRef50_Q15Q39 Cluster: Putative uncharacterized protein; n=1; ... 34 3.4
UniRef50_A7TKI9 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_Q9P744 Cluster: Putative uncharacterized protein 1A9.24... 33 7.8
UniRef50_P13529 Cluster: Genome polyprotein [Contains: P1 protei... 33 7.8
>UniRef50_O97159 Cluster: Chromodomain-helicase-DNA-binding protein
Mi-2 homolog; n=9; Coelomata|Rep:
Chromodomain-helicase-DNA-binding protein Mi-2 homolog -
Drosophila melanogaster (Fruit fly)
Length = 1982
Score = 261 bits (639), Expect = 1e-68
Identities = 121/126 (96%), Positives = 124/126 (98%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM
Sbjct: 1400 ARVGGNIEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 1459
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPEL+ K
Sbjct: 1460 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELILK 1519
Query: 463 PVEPVK 480
P EPV+
Sbjct: 1520 PCEPVR 1525
>UniRef50_Q14839-2 Cluster: Isoform 2 of Q14839 ; n=19;
Euteleostomi|Rep: Isoform 2 of Q14839 - Homo sapiens
(Human)
Length = 1940
Score = 232 bits (567), Expect = 6e-60
Identities = 107/117 (91%), Positives = 113/117 (96%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFNARQRK+FLNAIMRYGMPPQDAF +QWLVRDLRGKSE+ FKAYVSLFM
Sbjct: 1433 ARVGGNIEVLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFM 1492
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPEL 453
RHLCEPGAD AETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEH+NG +SMPEL
Sbjct: 1493 RHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPEL 1549
>UniRef50_Q8TDI0 Cluster: Chromodomain-helicase-DNA-binding protein 5;
n=30; Deuterostomia|Rep:
Chromodomain-helicase-DNA-binding protein 5 - Homo
sapiens (Human)
Length = 1954
Score = 230 bits (562), Expect = 3e-59
Identities = 106/126 (84%), Positives = 116/126 (92%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFNARQRK+FLNAIMR+GMPPQDAFNS WLVRDLRGKSE+ F+AYVSLFM
Sbjct: 1413 ARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFM 1472
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEPGAD AETFADGVPREGLSRQHVLTRIGVMSL+RKKVQEFEH+NG YS P+L+ +
Sbjct: 1473 RHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPE 1532
Query: 463 PVEPVK 480
E K
Sbjct: 1533 GPEGKK 1538
>UniRef50_Q4SNF1 Cluster: Chromosome 8 SCAF14543, whole genome shotgun
sequence; n=2; Euteleostomi|Rep: Chromosome 8 SCAF14543,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 1989
Score = 228 bits (558), Expect = 8e-59
Identities = 104/115 (90%), Positives = 111/115 (96%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFNARQRK+FLNA+MRYGMPPQDAF +QWLVRDLRGKSE+ FKAYVSLFM
Sbjct: 1421 ARVGGNIEVLGFNARQRKAFLNAVMRYGMPPQDAFTNQWLVRDLRGKSEKEFKAYVSLFM 1480
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMP 447
RHLCEPGAD AETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEH+NG +SMP
Sbjct: 1481 RHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGQWSMP 1535
>UniRef50_Q12873 Cluster: Chromodomain-helicase-DNA-binding protein 3;
n=124; Eumetazoa|Rep: Chromodomain-helicase-DNA-binding
protein 3 - Homo sapiens (Human)
Length = 2000
Score = 223 bits (545), Expect = 3e-57
Identities = 101/121 (83%), Positives = 113/121 (93%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFN RQRK+FLNA+MR+GMPPQDAF +QWLVRDLRGK+E+ FKAYVSLFM
Sbjct: 1401 ARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFM 1460
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEPGAD +ETFADGVPREGLSRQ VLTRIGVMSL++KKVQEFEHING +SMPEL+
Sbjct: 1461 RHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPD 1520
Query: 463 P 465
P
Sbjct: 1521 P 1521
>UniRef50_Q22516 Cluster: Chromodomain-helicase-DNA-binding protein 3
homolog; n=3; Caenorhabditis|Rep:
Chromodomain-helicase-DNA-binding protein 3 homolog -
Caenorhabditis elegans
Length = 1787
Score = 180 bits (439), Expect = 2e-44
Identities = 83/120 (69%), Positives = 98/120 (81%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
A+V G +EVLGFN RQRK+F NA+MR+GMPPQD S W VRDLR KSE+ FKAY SLFM
Sbjct: 1303 AKVNGQIEVLGFNPRQRKAFYNAVMRWGMPPQDLTQSSWQVRDLRNKSEKVFKAYSSLFM 1362
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEP DN+++F DGVPREGL+RQ VL+RIG+MS++RKKVQEFE NG +SMPE K
Sbjct: 1363 RHLCEPVVDNSDSFMDGVPREGLNRQAVLSRIGLMSILRKKVQEFEKFNGEWSMPETREK 1422
>UniRef50_Q4T5L7 Cluster: Chromosome undetermined SCAF9199, whole
genome shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome undetermined SCAF9199, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 1369
Score = 131 bits (316), Expect = 2e-29
Identities = 60/77 (77%), Positives = 66/77 (85%)
Frame = +1
Query: 217 WLVRDLRGKSERNFKAYVSLFMRHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLI 396
W + L +F+AYVSLFMRHLCEPGAD AETFADGVPREGLSRQHVLTRIGVMSLI
Sbjct: 1256 WCIVGLVSDITLSFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLI 1315
Query: 397 RKKVQEFEHINGYYSMP 447
RKKVQEFEH+NG +S+P
Sbjct: 1316 RKKVQEFEHVNGQWSLP 1332
>UniRef50_Q9S775 Cluster: CHD3-type chromatin-remodeling factor
PICKLE; n=9; Magnoliophyta|Rep: CHD3-type
chromatin-remodeling factor PICKLE - Arabidopsis thaliana
(Mouse-ear cress)
Length = 1384
Score = 75.8 bits (178), Expect = 8e-13
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Frame = +1
Query: 112 GGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQW--LVRDLRGKSERNFKAYVSLFMR 285
G + VLGFN QR F+ +MRYG A N W V L+ K+ Y LF++
Sbjct: 945 GRSFRVLGFNQSQRAIFVQTLMRYG-----AGNFDWKEFVPRLKQKTFEEINEYGILFLK 999
Query: 286 HLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELV 456
H+ E +N+ TF+DGVP+EGL + VL RI ++ L+++KV+ E G P +
Sbjct: 1000 HIAEEIDENSPTFSDGVPKEGLRIEDVLVRIALLILVQEKVKFVEDHPGKPVFPSRI 1056
>UniRef50_A7P5Y1 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 891
Score = 70.9 bits (166), Expect = 2e-11
Identities = 41/100 (41%), Positives = 61/100 (61%)
Frame = +1
Query: 112 GGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHL 291
G + VLGFN QR +F+ +MR+G+ D +++ R L+ K+ K Y +LF+ H+
Sbjct: 380 GRSFRVLGFNQNQRAAFVQVLMRFGVGEFDW--AEFTPR-LKQKTFEEIKDYGTLFLAHI 436
Query: 292 CEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQ 411
E D+ TF+DGVP+EGL VL RI V+ L+R KV+
Sbjct: 437 SEDITDSP-TFSDGVPKEGLRIPDVLVRIAVLLLVRDKVK 475
>UniRef50_A5BRA6 Cluster: Putative uncharacterized protein; n=2;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 755
Score = 68.9 bits (161), Expect = 1e-10
Identities = 40/98 (40%), Positives = 59/98 (60%)
Frame = +1
Query: 112 GGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHL 291
G + VLGFN QR +F+ +MR+G+ D +++ R L+ K+ K Y +LF+ H+
Sbjct: 222 GRSFRVLGFNQNQRAAFVQVLMRFGVGEFDW--AEFTPR-LKQKTFEEIKDYGTLFLAHI 278
Query: 292 CEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKK 405
E D+ TF+DGVP+EGL VL RI V+ L+R K
Sbjct: 279 SEDITDSP-TFSDGVPKEGLRIPDVLVRIAVLLLVRDK 315
>UniRef50_A2YA18 Cluster: Putative uncharacterized protein; n=2; Oryza
sativa|Rep: Putative uncharacterized protein - Oryza
sativa subsp. indica (Rice)
Length = 1364
Score = 59.7 bits (138), Expect = 6e-08
Identities = 39/103 (37%), Positives = 53/103 (51%)
Frame = +1
Query: 112 GGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHL 291
G + V GFN QR FL +MRYG D ++ R L+GKS + Y L M HL
Sbjct: 964 GRALRVYGFNQIQRTQFLQTLMRYGFQNYDW--KEFTPR-LKGKSVEEIQRYAELVMIHL 1020
Query: 292 CEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFE 420
E D+ +ADGVP+E + L R+ +SL+ +KV E
Sbjct: 1021 LEDINDSG-YYADGVPKE-MRTDETLVRLANISLVEEKVAAME 1061
>UniRef50_UPI000034F14B Cluster: chromatin remodeling factor,
putative; n=1; Arabidopsis thaliana|Rep: chromatin
remodeling factor, putative - Arabidopsis thaliana
Length = 1202
Score = 58.0 bits (134), Expect = 2e-07
Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Frame = +1
Query: 112 GGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQW--LVRDLRGKSERNFKAYVSLFMR 285
G + VLGFN +R FL RYG A N W V L K+ Y LF++
Sbjct: 881 GRYLMVLGFNETERDIFLRTFKRYG-----AGNFDWKEFVNPLYMKTYDEINKYGILFLK 935
Query: 286 HLCEPGADNAETF--------ADGVPREGLSRQHVLTRIGVMSLIRKKVQ 411
H+ E DN+ F ADGVP+EG+S +L + M L+++K Q
Sbjct: 936 HIAENPTDNSTNFKVITAMVYADGVPKEGISSDELLVSMTFMMLVKEKCQ 985
>UniRef50_Q9SZ57 Cluster: Putative uncharacterized protein
AT4g31900; n=1; Arabidopsis thaliana|Rep: Putative
uncharacterized protein AT4g31900 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 1067
Score = 46.4 bits (105), Expect = 6e-04
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Frame = +1
Query: 250 RNFKAYVSLFMRHLCEPGADNAETF--------ADGVPREGLSRQHVLTRIGVMSLIRKK 405
R FK Y LF++H+ E DN+ F ADGVP+EG+S +L + M L+++K
Sbjct: 789 RTFKRYGILFLKHIAENPTDNSTNFKVITAMVYADGVPKEGISSDELLVSMTFMMLVKEK 848
Query: 406 VQ 411
Q
Sbjct: 849 CQ 850
>UniRef50_Q15Q39 Cluster: Putative uncharacterized protein; n=1;
Pseudoalteromonas atlantica T6c|Rep: Putative
uncharacterized protein - Pseudoalteromonas atlantica
(strain T6c / BAA-1087)
Length = 717
Score = 33.9 bits (74), Expect = 3.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 89 CLHYWPESAATWKFSASTPGRGSHSS 166
C HYWPES+ + SASTP +S
Sbjct: 613 CAHYWPESSGWHRISASTPQNSQPNS 638
>UniRef50_A7TKI9 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 717
Score = 33.5 bits (73), Expect = 4.5
Identities = 12/34 (35%), Positives = 25/34 (73%)
Frame = +1
Query: 331 GVPREGLSRQHVLTRIGVMSLIRKKVQEFEHING 432
G+ + + R++V+ ++ + S +RKK++EFE+ NG
Sbjct: 234 GIDADDIVRKNVIKQLQLASSLRKKIEEFENANG 267
>UniRef50_Q9P744 Cluster: Putative uncharacterized protein 1A9.240;
n=1; Neurospora crassa|Rep: Putative uncharacterized
protein 1A9.240 - Neurospora crassa
Length = 295
Score = 32.7 bits (71), Expect = 7.8
Identities = 31/104 (29%), Positives = 45/104 (43%)
Frame = -2
Query: 505 RHSHSPQTLSPAQLVFSPVPACCSTR*CVRIPEPFS*SNSLPRFVSKRADGIILPSERRP 326
RHS SP + AQ F P P S R R + S R+ S+R++ + S R+
Sbjct: 128 RHSKSPPRRAHAQDFFEPSPKAPSAR--QRSVD------SRDRYSSRRSESPVKHSSRKG 179
Query: 325 QMFPRCRRPVRRDGA*TRTRRP*SCAQTSRADLSLTTAS*KRPA 194
+ PR R P R R + SR D S++ + + PA
Sbjct: 180 SLPPRRRSPSPRRERGRERGRDSGRTRLSRRDYSVSESRSRSPA 223
>UniRef50_P13529 Cluster: Genome polyprotein [Contains: P1 proteinase
(N-terminal protein); Helper component proteinase (EC
3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1);
Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa
protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (EC 3.4.22.44) (NI-a) (NIa)
(NIa-pro) (49 kDa proteinase) (49 kDa-Pro); Nuclear
inclusion protein B (EC 2.7.7.48) (NI-b) (NIb)
(RNA-directed RNA polymerase); Coat protein (CP)]; n=502;
Potyviridae|Rep: Genome polyprotein [Contains: P1
proteinase (N-terminal protein); Helper component
proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (EC
3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral genome-linked
protein (VPg); Nuclear inclusion protein A (EC 3.4.22.44)
(NI-a) (NIa) (NIa-pro) (49 kDa proteinase) (49 kDa-Pro);
Nuclear inclusion protein B (EC 2.7.7.48) (NI-b) (NIb)
(RNA-directed RNA polymerase); Coat protein (CP)] - Plum
pox potyvirus (strain D) (PPV)
Length = 3141
Score = 32.7 bits (71), Expect = 7.8
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +1
Query: 241 KSERNFKAYVSLFMRHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFE 420
+ ER +A+ C + + + R ++ H IGV+ + + ++ EF+
Sbjct: 1722 EQERTKQAHFRAMTSQSCSSSNFSLSSITSAI-RSKYAKDHTEENIGVLQMAKSQLLEFK 1780
Query: 421 HINGYYSMPELVR 459
++N S PELVR
Sbjct: 1781 NLNIDPSYPELVR 1793
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,533,363
Number of Sequences: 1657284
Number of extensions: 11188609
Number of successful extensions: 34140
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 32966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34116
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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