Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0607
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    25   0.71 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   0.94 
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   3.8  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   6.7  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   6.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.8  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 205 FNSQWLVRDLRGKSERNFKAYVSLFMRHLCEPGAD-NAETF 324
           +NS+   RD +GK + NF      F  HL    A  NAETF
Sbjct: 25  YNSKAYFRDGQGKFDVNFIDPALQFCTHLIYGYAGINAETF 65


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 526 WRARDWGRHSHSPQTLSPAQLVFSPVP--ACCSTR 428
           W A  +GR   +PQ+L P+Q   SP     C STR
Sbjct: 244 WVA-SFGRPKMTPQSLLPSQTGLSPYLRFGCLSTR 277


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 378 DSCQNVLTG*SF 343
           DSC N+LTG  F
Sbjct: 390 DSCSNILTGDQF 401


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -2

Query: 526 WRARDWGRHSHSP 488
           W  + W  HSH P
Sbjct: 45  WEPQMWHHHSHMP 57


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -2

Query: 526 WRARDWGRHSHSP 488
           W  + W  HSH P
Sbjct: 45  WEPQMWHHHSHMP 57


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 254 TSRPTCPCSCAISANRAPTTRKHLR 328
           T R TC C     A R      HLR
Sbjct: 286 TGRATCDCPNCQEAERLGPAGVHLR 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,789
Number of Sequences: 336
Number of extensions: 2445
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)