Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0607
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   5.4  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             25   9.5  
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    25   9.5  

>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 33  AQSPE*ASPRKARGTRPTAASITGQSRRQHGSSRLQRQAEEVIPQCY 173
           AQ  +    +  R + PT+AS+T Q+ +Q  +++L   A +   Q Y
Sbjct: 451 AQQQQQQQQQLHRTSNPTSASVTSQNGQQPINTKLSANAAKTNYQSY 497


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 385 MSLIRKKVQEFEHINGYYSMPELVRKPVE 471
           M+L   +++E++  NGY +  E+ + P E
Sbjct: 1   MALTNGRIEEYDIQNGYQNTEEIKKLPAE 29


>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 14  RMIMEICSVAGVSVASKSERNATDRCLHYWPESAATWKFSASTP 145
           R ++EIC +  +   +  + N  +R L Y+P+   +++   +TP
Sbjct: 193 RWMIEICELWSLEELAMLDENLINRLLGYFPKKTPSYR-EITTP 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,391
Number of Sequences: 5004
Number of extensions: 41346
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)