Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0607
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418...    60   2e-09
06_03_1201 + 28359286-28359452,28360018-28360075,28361060-283611...    29   4.2  
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840...    28   5.6  
04_04_1038 - 30319139-30319357,30319544-30319714,30319803-303198...    28   5.6  
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642...    27   9.8  
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895...    27   9.8  

>06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,
            4180592-4180732,4180830-4180959,4182306-4182436,
            4182528-4182601,4182680-4182741,4183135-4183209,
            4184658-4184760,4184835-4184991,4185549-4185743,
            4186204-4186282,4186697-4186806,4187249-4187374,
            4187475-4187541,4187622-4187791,4187880-4188018,
            4188361-4188522,4188672-4188772,4188852-4188994,
            4189438-4189537,4190364-4190414,4191062-4191169,
            4191279-4191494,4191585-4191721,4191820-4191915,
            4192017-4192234,4192764-4192925,4193006-4193163,
            4194221-4194379
          Length = 1364

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 39/103 (37%), Positives = 53/103 (51%)
 Frame = +1

Query: 112  GGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHL 291
            G  + V GFN  QR  FL  +MRYG    D    ++  R L+GKS    + Y  L M HL
Sbjct: 964  GRALRVYGFNQIQRTQFLQTLMRYGFQNYDW--KEFTPR-LKGKSVEEIQRYAELVMIHL 1020

Query: 292  CEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFE 420
             E   D+   +ADGVP+E +     L R+  +SL+ +KV   E
Sbjct: 1021 LEDINDSG-YYADGVPKE-MRTDETLVRLANISLVEEKVAAME 1061


>06_03_1201 +
           28359286-28359452,28360018-28360075,28361060-28361152,
           28362100-28362421,28362698-28362982,28363431-28363459
          Length = 317

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +3

Query: 57  PRKARGTRPTAASITGQSRRQHGSSRLQRQAEEVIPQ----CYHAVRDAA-AGRFQLAVV 221
           PR+ R   P  A+  G+SR  H +  +    E   P      +  V+ AA  G FQ A V
Sbjct: 195 PRRFRPPPPPPATAAGESRGGHLALNVMSACENKTPTSGKILFPVVQMAALRGYFQSAKV 254

Query: 222 SERSAREV*AQL 257
           +E  A E+ A L
Sbjct: 255 AEEQAVEIAAVL 266


>07_03_0602 +
           19881998-19882217,19882303-19882496,19883719-19884039,
           19885016-19885244,19885554-19885653,19886413-19886539,
           19886603-19886780,19886859-19886917,19887082-19887568,
           19887682-19887836,19887930-19888100,19888181-19888270,
           19888714-19888872,19888940-19889223,19889435-19889498
          Length = 945

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 50  SVASKSERNATDRCLHY-WPESAATWKFSASTPG 148
           S  S +   A  RC H  W E+AA   +SAS PG
Sbjct: 41  SSPSPATAAAAQRCSHVSWEETAAAHLYSASLPG 74


>04_04_1038 -
           30319139-30319357,30319544-30319714,30319803-30319850,
           30319978-30320166
          Length = 208

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -3

Query: 336 NAVRKCFRVVGARFAEMAHEQGHVGLEVALRLPAQISH*PLRVESV 199
           N V + FRV GA     A ++G  G++  L LP+Q+    L V SV
Sbjct: 145 NNVTRPFRVAGAAALAPAIDKGLKGIQEKLNLPSQMYAFALVVGSV 190


>05_05_0020 -
           21560896-21561352,21563399-21563480,21564143-21564263,
           21564424-21565074,21565206-21565338,21565677-21565728,
           21566115-21566244,21567241-21567300,21567444-21567536,
           21567795-21567919,21568263-21568353,21568828-21569127,
           21569415-21570038
          Length = 972

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 286 HLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPE 450
           +L E   D   +F  G  R+     HV+   G   ++  K+     +NGY+S  E
Sbjct: 596 YLTEHDGDELASFLSGSNRKD---NHVIYSTGTDEIVELKLDSVPAVNGYHSTQE 647


>05_03_0254 +
           11089236-11089290,11089366-11089415,11089530-11089562,
           11090601-11091674,11092245-11092728,11092857-11092882,
           11092883-11092993,11093082-11093171,11093251-11093322,
           11094043-11094153,11095086-11095143,11095605-11095804,
           11096666-11096818,11097134-11097334
          Length = 905

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 358 QHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRKPVEPVK 480
           Q  +T   V+   RKKV EF+  +    +  ++R PVEPV+
Sbjct: 214 QDAITNCNVLLTERKKV-EFKSRDLVQDLGRIIRGPVEPVR 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,393,469
Number of Sequences: 37544
Number of extensions: 341983
Number of successful extensions: 1069
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)