Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0607
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)              112   3e-25
SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)               29   2.5  
SB_2885| Best HMM Match : Ras (HMM E-Value=0.0059)                     29   4.3  
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15)             28   7.6  

>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score =  112 bits (269), Expect = 3e-25
 Identities = 54/85 (63%), Positives = 64/85 (75%)
 Frame = +1

Query: 220  LVRDLRGKSERNFKAYVSLFMRHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIR 399
            +VRDLRGK  +  +AY S+F+RHLCEPG D    F+DGVPREGL RQ VLTRIGVMSLIR
Sbjct: 1386 VVRDLRGKGRKAVQAYSSMFLRHLCEPGYDGGSQFSDGVPREGLHRQQVLTRIGVMSLIR 1445

Query: 400  KKVQEFEHINGYYSMPELVRKPVEP 474
            KKV+EF  ING +   +L   P+EP
Sbjct: 1446 KKVEEFAPING-WDCSKLESTPLEP 1469


>SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 893

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 14  RMIMEICSVAGVSVASKSERNATDRCLHYWPESAATWKF 130
           +MI E  S   + + +  ER    +C  YWPE   TW F
Sbjct: 486 QMIWEQESTLVIMLTTTMERGRV-KCHQYWPEGEDTWTF 523


>SB_2885| Best HMM Match : Ras (HMM E-Value=0.0059)
          Length = 141

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 212 ELKASCGGIPYRMIALRND 156
           ELK +C G+PY +I  +ND
Sbjct: 4   ELKEACPGVPYLLIGCKND 22


>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
 Frame = +1

Query: 115 GNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHLC 294
           G   +LGF+  + KS +  +   G+  QD+ N    +      S  +FK  + +     C
Sbjct: 110 GRPHILGFSLEELKSRIEILEASGINGQDSLNIATAIPSHLDFSAHSFKDIIEILQDLKC 169

Query: 295 EPGADNAET-FADGVPREG-LSRQHVLTRIGVMSLI 396
                  +  F  G+  E  L+  + L ++G+MS +
Sbjct: 170 NVAEIVIKAPFIFGMDSERLLNNVNRLRKVGIMSQV 205


>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 33  AQSPE*ASPRKARGTRPTAASITGQSRRQHGSSRLQRQAEE 155
           ++SP+ +SP++  G R T+   +   +RQ    RLQR A +
Sbjct: 184 SKSPKKSSPKRKSGKRKTSLKFS-HKKRQKAWKRLQRAATD 223


>SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15)
          Length = 631

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 279 HAPSLRTGRRQRGNICGRRSEGRIIPSARFDTNRGNE 389
           H+P  R G    GN+CG++++      AR   + G++
Sbjct: 289 HSPDSRIGFGAMGNLCGQKNDNSAGNEARCSPDNGDK 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,002,582
Number of Sequences: 59808
Number of extensions: 356652
Number of successful extensions: 911
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)