Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0607
         (650 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    26   1.2  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   8.4  

>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 26  EICSVAGVSVASKSERNATDRCLHYWPESAATWKFSASTPGRGSHS 163
           E CS +GVS A  S  +A    +  W       ++  ST GR +H+
Sbjct: 823 ECCSFSGVSNAGLSRSSAKQLSMRKWQS-----EWDCSTKGRTTHA 863


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 280 MRHLCEPGADNAETFADGVPREGLSRQH 363
           +R LC+  +DNA +  D   R   S  H
Sbjct: 318 LRELCKEASDNAHSRVDPDERAAASEIH 345


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,621
Number of Sequences: 2352
Number of extensions: 11441
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)