Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0607
(650 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X86691-1|CAA60384.1| 1912|Homo sapiens Mi-2 protein protein. 232 9e-61
BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein. 232 9e-61
AL035406-11|CAI19894.1| 1195|Homo sapiens chromodomain helicase ... 230 4e-60
AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase D... 230 4e-60
AL035406-1|CAI19883.1| 808|Homo sapiens chromodomain helicase D... 230 4e-60
AL031847-11|CAI19451.1| 1195|Homo sapiens chromodomain helicase ... 230 4e-60
AL031847-10|CAI19450.1| 1954|Homo sapiens chromodomain helicase ... 230 4e-60
AK126012-1|BAC86391.1| 671|Homo sapiens protein ( Homo sapiens ... 230 4e-60
AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase D... 230 4e-60
AB007913-1|BAA32289.1| 978|Homo sapiens KIAA0444 protein protein. 230 4e-60
U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase prot... 223 4e-58
BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein. 223 4e-58
AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein. 223 4e-58
>X86691-1|CAA60384.1| 1912|Homo sapiens Mi-2 protein protein.
Length = 1912
Score = 232 bits (567), Expect = 9e-61
Identities = 107/117 (91%), Positives = 113/117 (96%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFNARQRK+FLNAIMRYGMPPQDAF +QWLVRDLRGKSE+ FKAYVSLFM
Sbjct: 1405 ARVGGNIEVLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFM 1464
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPEL 453
RHLCEPGAD AETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEH+NG +SMPEL
Sbjct: 1465 RHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPEL 1521
>BC038596-1|AAH38596.1| 1937|Homo sapiens CHD4 protein protein.
Length = 1937
Score = 232 bits (567), Expect = 9e-61
Identities = 107/117 (91%), Positives = 113/117 (96%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFNARQRK+FLNAIMRYGMPPQDAF +QWLVRDLRGKSE+ FKAYVSLFM
Sbjct: 1430 ARVGGNIEVLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFM 1489
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPEL 453
RHLCEPGAD AETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEH+NG +SMPEL
Sbjct: 1490 RHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGRWSMPEL 1546
>AL035406-11|CAI19894.1| 1195|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1195
Score = 230 bits (562), Expect = 4e-60
Identities = 106/126 (84%), Positives = 116/126 (92%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFNARQRK+FLNAIMR+GMPPQDAFNS WLVRDLRGKSE+ F+AYVSLFM
Sbjct: 929 ARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFM 988
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEPGAD AETFADGVPREGLSRQHVLTRIGVMSL+RKKVQEFEH+NG YS P+L+ +
Sbjct: 989 RHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPE 1048
Query: 463 PVEPVK 480
E K
Sbjct: 1049 GPEGKK 1054
>AL035406-9|CAI19891.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 230 bits (562), Expect = 4e-60
Identities = 106/126 (84%), Positives = 116/126 (92%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFNARQRK+FLNAIMR+GMPPQDAFNS WLVRDLRGKSE+ F+AYVSLFM
Sbjct: 1413 ARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFM 1472
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEPGAD AETFADGVPREGLSRQHVLTRIGVMSL+RKKVQEFEH+NG YS P+L+ +
Sbjct: 1473 RHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPE 1532
Query: 463 PVEPVK 480
E K
Sbjct: 1533 GPEGKK 1538
>AL035406-1|CAI19883.1| 808|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 808
Score = 230 bits (562), Expect = 4e-60
Identities = 106/126 (84%), Positives = 116/126 (92%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFNARQRK+FLNAIMR+GMPPQDAFNS WLVRDLRGKSE+ F+AYVSLFM
Sbjct: 270 ARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFM 329
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEPGAD AETFADGVPREGLSRQHVLTRIGVMSL+RKKVQEFEH+NG YS P+L+ +
Sbjct: 330 RHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPE 389
Query: 463 PVEPVK 480
E K
Sbjct: 390 GPEGKK 395
>AL031847-11|CAI19451.1| 1195|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1195
Score = 230 bits (562), Expect = 4e-60
Identities = 106/126 (84%), Positives = 116/126 (92%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFNARQRK+FLNAIMR+GMPPQDAFNS WLVRDLRGKSE+ F+AYVSLFM
Sbjct: 929 ARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFM 988
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEPGAD AETFADGVPREGLSRQHVLTRIGVMSL+RKKVQEFEH+NG YS P+L+ +
Sbjct: 989 RHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPE 1048
Query: 463 PVEPVK 480
E K
Sbjct: 1049 GPEGKK 1054
>AL031847-10|CAI19450.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 230 bits (562), Expect = 4e-60
Identities = 106/126 (84%), Positives = 116/126 (92%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFNARQRK+FLNAIMR+GMPPQDAFNS WLVRDLRGKSE+ F+AYVSLFM
Sbjct: 1413 ARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFM 1472
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEPGAD AETFADGVPREGLSRQHVLTRIGVMSL+RKKVQEFEH+NG YS P+L+ +
Sbjct: 1473 RHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPE 1532
Query: 463 PVEPVK 480
E K
Sbjct: 1533 GPEGKK 1538
>AK126012-1|BAC86391.1| 671|Homo sapiens protein ( Homo sapiens
cDNA FLJ44024 fis, clone TESTI4026524, moderately
similar to Chromodomain helicase-DNA-binding protein 4.
).
Length = 671
Score = 230 bits (562), Expect = 4e-60
Identities = 106/126 (84%), Positives = 116/126 (92%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFNARQRK+FLNAIMR+GMPPQDAFNS WLVRDLRGKSE+ F+AYVSLFM
Sbjct: 133 ARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFM 192
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEPGAD AETFADGVPREGLSRQHVLTRIGVMSL+RKKVQEFEH+NG YS P+L+ +
Sbjct: 193 RHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPE 252
Query: 463 PVEPVK 480
E K
Sbjct: 253 GPEGKK 258
>AF425231-1|AAL98962.1| 1954|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 1954
Score = 230 bits (562), Expect = 4e-60
Identities = 106/126 (84%), Positives = 116/126 (92%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFNARQRK+FLNAIMR+GMPPQDAFNS WLVRDLRGKSE+ F+AYVSLFM
Sbjct: 1413 ARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFM 1472
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEPGAD AETFADGVPREGLSRQHVLTRIGVMSL+RKKVQEFEH+NG YS P+L+ +
Sbjct: 1473 RHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPE 1532
Query: 463 PVEPVK 480
E K
Sbjct: 1533 GPEGKK 1538
>AB007913-1|BAA32289.1| 978|Homo sapiens KIAA0444 protein protein.
Length = 978
Score = 230 bits (562), Expect = 4e-60
Identities = 106/126 (84%), Positives = 116/126 (92%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFNARQRK+FLNAIMR+GMPPQDAFNS WLVRDLRGKSE+ F+AYVSLFM
Sbjct: 437 ARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFM 496
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEPGAD AETFADGVPREGLSRQHVLTRIGVMSL+RKKVQEFEH+NG YS P+L+ +
Sbjct: 497 RHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPE 556
Query: 463 PVEPVK 480
E K
Sbjct: 557 GPEGKK 562
>U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase protein.
Length = 2000
Score = 223 bits (545), Expect = 4e-58
Identities = 101/121 (83%), Positives = 113/121 (93%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFN RQRK+FLNA+MR+GMPPQDAF +QWLVRDLRGK+E+ FKAYVSLFM
Sbjct: 1401 ARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFM 1460
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEPGAD +ETFADGVPREGLSRQ VLTRIGVMSL++KKVQEFEHING +SMPEL+
Sbjct: 1461 RHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPD 1520
Query: 463 P 465
P
Sbjct: 1521 P 1521
>BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein.
Length = 661
Score = 223 bits (545), Expect = 4e-58
Identities = 101/121 (83%), Positives = 113/121 (93%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFN RQRK+FLNA+MR+GMPPQDAF +QWLVRDLRGK+E+ FKAYVSLFM
Sbjct: 62 ARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFM 121
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEPGAD +ETFADGVPREGLSRQ VLTRIGVMSL++KKVQEFEHING +SMPEL+
Sbjct: 122 RHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPD 181
Query: 463 P 465
P
Sbjct: 182 P 182
>AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.
Length = 1944
Score = 223 bits (545), Expect = 4e-58
Identities = 101/121 (83%), Positives = 113/121 (93%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
ARVGGN+EVLGFN RQRK+FLNA+MR+GMPPQDAF +QWLVRDLRGK+E+ FKAYVSLFM
Sbjct: 1401 ARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFM 1460
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEPGAD +ETFADGVPREGLSRQ VLTRIGVMSL++KKVQEFEHING +SMPEL+
Sbjct: 1461 RHLCEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPD 1520
Query: 463 P 465
P
Sbjct: 1521 P 1521
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,857,402
Number of Sequences: 237096
Number of extensions: 1657451
Number of successful extensions: 4095
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4094
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -