Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0607
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113368-1|AAM29373.1|  789|Drosophila melanogaster LD32039p pro...   261   7e-70
AF119716-1|AAD17276.1| 1982|Drosophila melanogaster dMi-2 protei...   261   7e-70
AF007780-1|AAB87384.1| 1518|Drosophila melanogaster CHD3 protein.     261   7e-70
AE014296-3240|AAX52739.1| 1983|Drosophila melanogaster CG8103-PB...   261   7e-70
AE014296-3239|AAF49099.2| 1982|Drosophila melanogaster CG8103-PA...   261   7e-70
BT010226-1|AAQ23544.1| 2240|Drosophila melanogaster RE72677p pro...    29   4.1  
AE014297-2224|AAF55327.2| 2240|Drosophila melanogaster CG14900-P...    29   4.1  
AE013599-1898|AAF58242.1| 1290|Drosophila melanogaster CG17390-P...    29   4.1  
AY071551-1|AAL49173.1|  283|Drosophila melanogaster RE61793p pro...    29   5.5  
AE014297-3981|AAF56612.1|  283|Drosophila melanogaster CG5480-PA...    29   5.5  
AB053260-1|BAB20634.1| 2240|Drosophila melanogaster Cad89D protein.    29   5.5  
AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC...    29   7.2  
AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB...    29   7.2  
AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA...    29   7.2  

>AY113368-1|AAM29373.1|  789|Drosophila melanogaster LD32039p
           protein.
          Length = 789

 Score =  261 bits (639), Expect = 7e-70
 Identities = 121/126 (96%), Positives = 124/126 (98%)
 Frame = +1

Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
           ARVGGN+EVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM
Sbjct: 207 ARVGGNIEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 266

Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
           RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPEL+ K
Sbjct: 267 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELILK 326

Query: 463 PVEPVK 480
           P EPV+
Sbjct: 327 PCEPVR 332


>AF119716-1|AAD17276.1| 1982|Drosophila melanogaster dMi-2 protein
            protein.
          Length = 1982

 Score =  261 bits (639), Expect = 7e-70
 Identities = 121/126 (96%), Positives = 124/126 (98%)
 Frame = +1

Query: 103  ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
            ARVGGN+EVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM
Sbjct: 1400 ARVGGNIEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 1459

Query: 283  RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
            RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPEL+ K
Sbjct: 1460 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELILK 1519

Query: 463  PVEPVK 480
            P EPV+
Sbjct: 1520 PCEPVR 1525


>AF007780-1|AAB87384.1| 1518|Drosophila melanogaster CHD3 protein.
          Length = 1518

 Score =  261 bits (639), Expect = 7e-70
 Identities = 121/126 (96%), Positives = 124/126 (98%)
 Frame = +1

Query: 103  ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
            ARVGGN+EVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM
Sbjct: 936  ARVGGNIEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 995

Query: 283  RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
            RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPEL+ K
Sbjct: 996  RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELILK 1055

Query: 463  PVEPVK 480
            P EPV+
Sbjct: 1056 PCEPVR 1061


>AE014296-3240|AAX52739.1| 1983|Drosophila melanogaster CG8103-PB,
            isoform B protein.
          Length = 1983

 Score =  261 bits (639), Expect = 7e-70
 Identities = 121/126 (96%), Positives = 124/126 (98%)
 Frame = +1

Query: 103  ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
            ARVGGN+EVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM
Sbjct: 1401 ARVGGNIEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 1460

Query: 283  RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
            RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPEL+ K
Sbjct: 1461 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELILK 1520

Query: 463  PVEPVK 480
            P EPV+
Sbjct: 1521 PCEPVR 1526


>AE014296-3239|AAF49099.2| 1982|Drosophila melanogaster CG8103-PA,
            isoform A protein.
          Length = 1982

 Score =  261 bits (639), Expect = 7e-70
 Identities = 121/126 (96%), Positives = 124/126 (98%)
 Frame = +1

Query: 103  ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
            ARVGGN+EVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM
Sbjct: 1400 ARVGGNIEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 1459

Query: 283  RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
            RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPEL+ K
Sbjct: 1460 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELILK 1519

Query: 463  PVEPVK 480
            P EPV+
Sbjct: 1520 PCEPVR 1525


>BT010226-1|AAQ23544.1| 2240|Drosophila melanogaster RE72677p
           protein.
          Length = 2240

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 307 DNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGY 435
           D   T+++GVP     R  ++T I  +S  ++KV +FE +  Y
Sbjct: 674 DLLHTYSEGVPFAIEERSGIITVIRELSEFKRKVYQFEAVANY 716


>AE014297-2224|AAF55327.2| 2240|Drosophila melanogaster CG14900-PA
           protein.
          Length = 2240

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 307 DNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGY 435
           D   T+++GVP     R  ++T I  +S  ++KV +FE +  Y
Sbjct: 674 DLLHTYSEGVPFAIEERSGIITVIRELSEFKRKVYQFEAVANY 716


>AE013599-1898|AAF58242.1| 1290|Drosophila melanogaster CG17390-PA
           protein.
          Length = 1290

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -1

Query: 344 SLGTPSANVSALSAPGSQRWRMNKDT*ALKLRSDFPRRSLTNH 216
           S G+ SA+VS+  +   +R+ +   + +   R DFP+RS +NH
Sbjct: 344 STGSASASVSSNGSLQKRRYALALASDSSPSRMDFPKRSRSNH 386


>AY071551-1|AAL49173.1|  283|Drosophila melanogaster RE61793p
           protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 25/98 (25%), Positives = 41/98 (41%)
 Frame = +1

Query: 160 FLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHLCEPGADNAETFADGVP 339
           F      Y  P  D F     V DL    ++N +    +F+R     G +NA        
Sbjct: 88  FNKEFFTYSAPEAD-FEDNKSVSDLAATLKKNLRV---VFIRAPENKGLENAALALAKQA 143

Query: 340 REGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPEL 453
            E  +  +VLT+ G +S +  ++Q   H++   S PE+
Sbjct: 144 AEQQTAIYVLTKQGDLSSLANQLQNLNHVSA--SKPEV 179


>AE014297-3981|AAF56612.1|  283|Drosophila melanogaster CG5480-PA
           protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 25/98 (25%), Positives = 41/98 (41%)
 Frame = +1

Query: 160 FLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHLCEPGADNAETFADGVP 339
           F      Y  P  D F     V DL    ++N +    +F+R     G +NA        
Sbjct: 88  FNKEFFTYSAPEAD-FEDNKSVSDLAATLKKNLRV---VFIRAPENKGLENAALALAKQA 143

Query: 340 REGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPEL 453
            E  +  +VLT+ G +S +  ++Q   H++   S PE+
Sbjct: 144 AEQQTAIYVLTKQGDLSSLANQLQNLNHVSA--SKPEV 179


>AB053260-1|BAB20634.1| 2240|Drosophila melanogaster Cad89D protein.
          Length = 2240

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 307 DNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGY 435
           D   T+++GVP     R  ++T I  +S  ++KV +FE +  Y
Sbjct: 674 DLLHTYSEGVPFAIEERSGIITVIRELSDFKRKVYQFEAVANY 716


>AE014298-1804|AAF48196.2| 3604|Drosophila melanogaster CG4013-PC,
            isoform C protein.
          Length = 3604

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
 Frame = +3

Query: 27   RSAQSPE*ASPRKARGTRPTAASITGQSRRQ----HGSSRLQRQAEEVIPQCYHAVRDAA 194
            R+ Q P  A P   RG       ++ Q        HG S  Q+Q ++   Q     + AA
Sbjct: 2367 RAGQPPP-AQPPSGRGVAKVPPKLSPQQAHHLHPSHGHSPSQQQQQQQQQQ-QQQQQQAA 2424

Query: 195  AGRFQLAVVSERSAREV*AQLQGLRVLVHAPS 290
            A + QL V S        A     +++VHAP+
Sbjct: 2425 AAQQQLLVKSGSITHGTPANSAQQQIIVHAPA 2456


>AE014298-1803|AAN09315.1| 3604|Drosophila melanogaster CG4013-PB,
            isoform B protein.
          Length = 3604

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
 Frame = +3

Query: 27   RSAQSPE*ASPRKARGTRPTAASITGQSRRQ----HGSSRLQRQAEEVIPQCYHAVRDAA 194
            R+ Q P  A P   RG       ++ Q        HG S  Q+Q ++   Q     + AA
Sbjct: 2367 RAGQPPP-AQPPSGRGVAKVPPKLSPQQAHHLHPSHGHSPSQQQQQQQQQQ-QQQQQQAA 2424

Query: 195  AGRFQLAVVSERSAREV*AQLQGLRVLVHAPS 290
            A + QL V S        A     +++VHAP+
Sbjct: 2425 AAQQQLLVKSGSITHGTPANSAQQQIIVHAPA 2456


>AE014298-1802|AAF48195.2| 3604|Drosophila melanogaster CG4013-PA,
            isoform A protein.
          Length = 3604

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
 Frame = +3

Query: 27   RSAQSPE*ASPRKARGTRPTAASITGQSRRQ----HGSSRLQRQAEEVIPQCYHAVRDAA 194
            R+ Q P  A P   RG       ++ Q        HG S  Q+Q ++   Q     + AA
Sbjct: 2367 RAGQPPP-AQPPSGRGVAKVPPKLSPQQAHHLHPSHGHSPSQQQQQQQQQQ-QQQQQQAA 2424

Query: 195  AGRFQLAVVSERSAREV*AQLQGLRVLVHAPS 290
            A + QL V S        A     +++VHAP+
Sbjct: 2425 AAQQQLLVKSGSITHGTPANSAQQQIIVHAPA 2456


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,287,141
Number of Sequences: 53049
Number of extensions: 535893
Number of successful extensions: 1693
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1692
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)