Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0607
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 188 3e-48
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 188 3e-48
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 180 6e-46
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 180 6e-46
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 180 6e-46
U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical pr... 30 1.2
U13019-10|AAC24442.1| 757|Caenorhabditis elegans Hypothetical p... 29 3.8
AC006748-4|AAF60512.2| 371|Caenorhabditis elegans Hypothetical ... 29 3.8
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 27 8.7
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle... 27 8.7
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 27 8.7
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 27 8.7
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 188 bits (458), Expect = 3e-48
Identities = 83/117 (70%), Positives = 100/117 (85%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
A+V G +E+LGFN RQRK+F A+MR+GMPPQD+ SQWLVRDLR KSE+ F+AY SLFM
Sbjct: 1291 AKVNGQVEILGFNPRQRKAFYGAVMRWGMPPQDSHQSQWLVRDLRNKSEKVFRAYASLFM 1350
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPEL 453
RHLCEPGAD +TF DGVPREGL+RQHVL RIG++SL+R+KVQEFE NG +SMPE+
Sbjct: 1351 RHLCEPGADGHDTFNDGVPREGLNRQHVLGRIGLLSLVRRKVQEFEQYNGQWSMPEI 1407
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 188 bits (458), Expect = 3e-48
Identities = 83/117 (70%), Positives = 100/117 (85%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
A+V G +E+LGFN RQRK+F A+MR+GMPPQD+ SQWLVRDLR KSE+ F+AY SLFM
Sbjct: 1291 AKVNGQVEILGFNPRQRKAFYGAVMRWGMPPQDSHQSQWLVRDLRNKSEKVFRAYASLFM 1350
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPEL 453
RHLCEPGAD +TF DGVPREGL+RQHVL RIG++SL+R+KVQEFE NG +SMPE+
Sbjct: 1351 RHLCEPGADGHDTFNDGVPREGLNRQHVLGRIGLLSLVRRKVQEFEQYNGQWSMPEI 1407
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical protein
T14G8.1 protein.
Length = 1787
Score = 180 bits (439), Expect = 6e-46
Identities = 83/120 (69%), Positives = 98/120 (81%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
A+V G +EVLGFN RQRK+F NA+MR+GMPPQD S W VRDLR KSE+ FKAY SLFM
Sbjct: 1303 AKVNGQIEVLGFNPRQRKAFYNAVMRWGMPPQDLTQSSWQVRDLRNKSEKVFKAYSSLFM 1362
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEP DN+++F DGVPREGL+RQ VL+RIG+MS++RKKVQEFE NG +SMPE K
Sbjct: 1363 RHLCEPVVDNSDSFMDGVPREGLNRQAVLSRIGLMSILRKKVQEFEKFNGEWSMPETREK 1422
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical protein
T14G8.1 protein.
Length = 1787
Score = 180 bits (439), Expect = 6e-46
Identities = 83/120 (69%), Positives = 98/120 (81%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
A+V G +EVLGFN RQRK+F NA+MR+GMPPQD S W VRDLR KSE+ FKAY SLFM
Sbjct: 1303 AKVNGQIEVLGFNPRQRKAFYNAVMRWGMPPQDLTQSSWQVRDLRNKSEKVFKAYSSLFM 1362
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEP DN+++F DGVPREGL+RQ VL+RIG+MS++RKKVQEFE NG +SMPE K
Sbjct: 1363 RHLCEPVVDNSDSFMDGVPREGLNRQAVLSRIGLMSILRKKVQEFEKFNGEWSMPETREK 1422
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 180 bits (439), Expect = 6e-46
Identities = 83/120 (69%), Positives = 98/120 (81%)
Frame = +1
Query: 103 ARVGGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFM 282
A+V G +EVLGFN RQRK+F NA+MR+GMPPQD S W VRDLR KSE+ FKAY SLFM
Sbjct: 1303 AKVNGQIEVLGFNPRQRKAFYNAVMRWGMPPQDLTQSSWQVRDLRNKSEKVFKAYSSLFM 1362
Query: 283 RHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELVRK 462
RHLCEP DN+++F DGVPREGL+RQ VL+RIG+MS++RKKVQEFE NG +SMPE K
Sbjct: 1363 RHLCEPVVDNSDSFMDGVPREGLNRQAVLSRIGLMSILRKKVQEFEKFNGEWSMPETREK 1422
>U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical
protein F56D2.1 protein.
Length = 471
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = +3
Query: 270 VLVHAPSLRTGRRQRGNICGRRSEGRIIPSARFDTNRGNEFDQEKGSGIRTHQRVLQHAG 449
VL AP + G G + G+ F+ EK +G+ L H G
Sbjct: 31 VLASAPQAEVTTLKNGFRVVTEDNGSATATVGVWIETGSRFENEKNNGVAHFLERLIHKG 90
Query: 450 TGEKTS*AGES 482
TG++ S A ES
Sbjct: 91 TGKRASAALES 101
>U13019-10|AAC24442.1| 757|Caenorhabditis elegans Hypothetical
protein T12A2.2 protein.
Length = 757
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 465 WFSHQFRHAVVPVDVFEFLNLFPDQTHYP 379
WF+++ H +V ++FLN F ++ YP
Sbjct: 53 WFNYRATHHMVQHGFYKFLNWFDERAWYP 81
>AC006748-4|AAF60512.2| 371|Caenorhabditis elegans Hypothetical
protein Y39A3B.1 protein.
Length = 371
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 309 QRGNICGRRSEGRIIPSARFDTNRGNEFDQEKGSGI 416
Q+G G ++ +I SA +DT GN+ + GSG+
Sbjct: 87 QKGPYFGTGNDKMMILSANYDTLEGNQGVDDNGSGV 122
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical
protein T06E4.3b protein.
Length = 2514
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 130 ELPCCRRLWPVMEAAVGRVPLAFRGDAYSGD*ADLHYHSFHQN 2
EL CCR V + +PL R A GD A L H F N
Sbjct: 708 ELVCCRSEATVEKKLQMYIPLIGRSFALLGDDAALKVHGFLSN 750
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical
protein T06E4.3a protein.
Length = 2531
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 130 ELPCCRRLWPVMEAAVGRVPLAFRGDAYSGD*ADLHYHSFHQN 2
EL CCR V + +PL R A GD A L H F N
Sbjct: 708 ELVCCRSEATVEKKLQMYIPLIGRSFALLGDDAALKVHGFLSN 750
>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
nucleotide exchange factorfor RAS protein.
Length = 1413
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 337 PREGLSRQHVLTRIGVMSLIRKKVQ 411
PREGLS+QH +++LI K+V+
Sbjct: 801 PREGLSKQHKKFCKTILALIEKRVK 825
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 337 PREGLSRQHVLTRIGVMSLIRKKVQ 411
PREGLS+QH +++LI K+V+
Sbjct: 801 PREGLSKQHKKFCKTILALIEKRVK 825
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 130 ELPCCRRLWPVMEAAVGRVPLAFRGDAYSGD*ADLHYHSFHQN 2
EL CCR V + +PL R A GD A L H F N
Sbjct: 708 ELVCCRSEATVEKKLQMYIPLIGRSFALLGDDAALKVHGFLSN 750
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,797,566
Number of Sequences: 27780
Number of extensions: 249075
Number of successful extensions: 672
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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