Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0607
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL...    76   2e-14
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s...    58   5e-09
At4g35900.1 68417.m05099 DNA-binding protein-related weak simila...    29   3.5  
At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containi...    28   4.7  
At1g05070.1 68414.m00509 expressed protein                             27   8.2  

>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
            identical to chromatin remodeling factor CHD3
            [Arabidopsis thaliana] GI:6478518
          Length = 1384

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
 Frame = +1

Query: 112  GGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQW--LVRDLRGKSERNFKAYVSLFMR 285
            G +  VLGFN  QR  F+  +MRYG     A N  W   V  L+ K+      Y  LF++
Sbjct: 945  GRSFRVLGFNQSQRAIFVQTLMRYG-----AGNFDWKEFVPRLKQKTFEEINEYGILFLK 999

Query: 286  HLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELV 456
            H+ E   +N+ TF+DGVP+EGL  + VL RI ++ L+++KV+  E   G    P  +
Sbjct: 1000 HIAEEIDENSPTFSDGVPKEGLRIEDVLVRIALLILVQEKVKFVEDHPGKPVFPSRI 1056


>At4g31900.1 68417.m04533 chromatin remodeling factor, putative strong
            similarity to chromatin remodeling factor CHD3 (PICKLE)
            [Arabidopsis thaliana] GI:6478518; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 1202

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
 Frame = +1

Query: 112  GGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQW--LVRDLRGKSERNFKAYVSLFMR 285
            G  + VLGFN  +R  FL    RYG     A N  W   V  L  K+      Y  LF++
Sbjct: 881  GRYLMVLGFNETERDIFLRTFKRYG-----AGNFDWKEFVNPLYMKTYDEINKYGILFLK 935

Query: 286  HLCEPGADNAETF--------ADGVPREGLSRQHVLTRIGVMSLIRKKVQ 411
            H+ E   DN+  F        ADGVP+EG+S   +L  +  M L+++K Q
Sbjct: 936  HIAENPTDNSTNFKVITAMVYADGVPKEGISSDELLVSMTFMMLVKEKCQ 985


>At4g35900.1 68417.m05099 DNA-binding protein-related weak
           similarity to DNA-binding factor gmlip15 [Zea mays]
           GI:14289167
          Length = 245

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 348 IIPSARFDTNRGNEFDQEKGSGIRTHQRVLQH 443
           ++PS+ F   RG   D  +GSG R H+R++++
Sbjct: 195 LVPSSSFGKKRGQ--DSNEGSGNRRHKRMIKN 224


>At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q99615 DnaJ homolog
           subfamily C member 7 (Tetratricopeptide repeat protein
           2) {Homo sapiens}; contains Pfam profile PF00515: TPR
           Domain
          Length = 721

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 186 DAAAGRFQLAVVSERSAREV*AQLQGLRVLVHAPSLRTGRRQRGN 320
           + A GRF+ AVV+   A ++  Q   + +L     L T  R RGN
Sbjct: 460 ELALGRFENAVVTAEKASKIDPQNNEVEILYKNVRLITRARDRGN 504


>At1g05070.1 68414.m00509 expressed protein
          Length = 184

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 242 SLSATSRPTCPCSCAISANRAPTTRKHLRTA 334
           ++SA+S P+CPC C  S   A T  K L  A
Sbjct: 38  AVSASSCPSCPCEC--STYSAVTIPKELSNA 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,236,619
Number of Sequences: 28952
Number of extensions: 237941
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)