Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0605
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   3.6  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    26   4.7  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   8.2  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.2  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    25   8.2  

>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 53  FESLFRSKMFRLRYITINANMNNNPKACII 142
           FE L R +M+R   I  ++  N+ P AC+I
Sbjct: 140 FEGLVRFRMYRSEDIAASSIDNSTPLACMI 169


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 3   YLTFYKE--GFVNFSLANNSNLYFGPK 77
           +L FY+   GFVNF L N   L + PK
Sbjct: 222 FLEFYQALMGFVNFKLYNTLGLRYPPK 248


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 357 FSLVLEPAICRKPHRPFIFVRH*DFRLDLD 446
           F++ L   +CR+ H PF F  +  F L  D
Sbjct: 196 FTIALYALVCRELHEPFRFPGNEKFYLGFD 225


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 9   TFYKEGFVNFSLANNSNLYF 68
           TFYKE   N S++++  +YF
Sbjct: 457 TFYKEFISNISMSDDGRIYF 476


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 56  ESLFRSKMFRLRYITINANMNNNPKACIIKGTH*SSNKKERLQPSWRIIT**LKAI 223
           E   + K+  L+ +    N+N  PK   +  T  S      L+PSW +    ++AI
Sbjct: 490 EKELKKKILLLQSLASMGNINQPPKNLSLVETLDSYQTLAELEPSWNLTDADIRAI 545


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,115
Number of Sequences: 5004
Number of extensions: 58199
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)