Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0605
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    28   0.10 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.9  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 264 EFTAPKLYFRPDDKLILGGT-FLHTDSHHIWLFSLVL 371
           E+   KL + PDD    GG   LH  S HIWL  +VL
Sbjct: 76  EWNDYKLKWNPDD---YGGVDTLHVPSEHIWLPDIVL 109


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 315 GGTFLHTDSHHIWLFSLVL 371
           G T L+  S HIWL  +VL
Sbjct: 91  GVTELYVPSEHIWLPDIVL 109


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 297 DDKLILGGTFLHTDSHHIWLFSLVL 371
           D K   G   LH  S HIW   +VL
Sbjct: 89  DPKEYGGVEMLHVPSDHIWRPDIVL 113


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 315 GGTFLHTDSHHIWLFSLVL 371
           G   LH  S HIW   +VL
Sbjct: 99  GVKMLHVPSDHIWRPDIVL 117


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 315 GGTFLHTDSHHIWLFSLVL 371
           G   LH  S HIW   +VL
Sbjct: 99  GVKMLHVPSDHIWRPDIVL 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,620
Number of Sequences: 438
Number of extensions: 4250
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)