Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0604
         (578 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    26   0.20 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   5.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   5.7  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.6  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 234 LLDVPPFDRHRSRIGAAADWLLGGKCHQQSRCPLGLHPRS 353
           LL+    D HR +     +W+ GGK       P+ +HP S
Sbjct: 77  LLEFVQIDPHRWKY-VNGEWVPGGKAEVPPSNPIYIHPES 115


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/48 (22%), Positives = 17/48 (35%)
 Frame = +3

Query: 186 ASPIVHNAAQVTEASHLLDVPPFDRHRSRIGAAADWLLGGKCHQQSRC 329
           +SP ++ A      +H     P+       G   DW     C  Q+ C
Sbjct: 67  SSPCLNGATCQDHTTHYTCHCPYGYTGKDCGEYVDWCSTNPCENQATC 114


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 384 VTCKCRQGLP 355
           VTCKC  G P
Sbjct: 874 VTCKCENGKP 883


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 356  GSPCRHLQVTLRITSSSTTINSKGDSK 436
            GSPCR+         S T  ++ GD K
Sbjct: 928  GSPCRNSASPASSDRSGTPRSTNGDRK 954


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = -2

Query: 229 EASVTWAALWTIGEAPADRLVNLDQCGVPQ-RRFNY 125
           E ++ W  +W  G    D +  + QC + Q   F Y
Sbjct: 196 EVTLHWHGVWQRGSQYYDGVPFVTQCPIQQGNTFRY 231


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = -2

Query: 229 EASVTWAALWTIGEAPADRLVNLDQCGVPQ-RRFNY 125
           E ++ W  +W  G    D +  + QC + Q   F Y
Sbjct: 196 EVTLHWHGVWQRGSQYYDGVPFVTQCPIQQGNTFRY 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,499
Number of Sequences: 336
Number of extensions: 3105
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)