Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0604
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    47   2e-06
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    38   0.001
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    36   0.003
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    36   0.003
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    31   0.092
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    27   1.5  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   1.5  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   8.0  

>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 17/34 (50%), Positives = 25/34 (73%)
 Frame = +3

Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
           +GKI++E+Y +HAP TC+NF  L + GYY+   F
Sbjct: 10  LGKILIELYTEHAPKTCQNFYTLAKEGYYDGVIF 43


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNT 572
           G I +E++ K  P  CRNF++L   GYY+ T
Sbjct: 22  GDIQIELWCKEVPKACRNFIQLCLEGYYDGT 52


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
           +G ++++++ K AP TC NF++L +  YYN   F
Sbjct: 9   VGDLVIDLFVKEAPKTCENFLKLCKLKYYNFCPF 42


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +3

Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
           G+I +E++  +AP    NF++L ++GYY NT F
Sbjct: 285 GEINIELHTDYAPHAVYNFVQLAKQGYYRNTIF 317


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 31.5 bits (68), Expect = 0.092
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
           G I +++Y + AP   +NF      GYY+NT F
Sbjct: 464 GDISIKLYPEEAPKAVQNFTTHAENGYYDNTIF 496


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 192 PIVHNAAQVTEASHLLDVPP 251
           P+++NA+ +TE S+   VPP
Sbjct: 33  PVIYNASNITEVSNSTTVPP 52


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 149 SSSTSFQLQQRVVAMIYPVYRHSNNL 72
           SSS S + +  + A++YP+Y H N L
Sbjct: 73  SSSLSSESEHALDALVYPIYSHHNIL 98


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 358 QSLSAFTGDSAHHIIKHYYKQQGRQQATLLGACGDHDIIQ 477
           Q + +FTGD A    KH+ K   R   T +G     D I+
Sbjct: 620 QWIVSFTGDIALSRYKHFSKFSARASTTEIGHVKSADRIE 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,938
Number of Sequences: 5004
Number of extensions: 49690
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)