Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0604
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1578 - 27992848-27992893,27993431-27993515,27994107-279942... 57 9e-09
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886... 34 0.071
06_01_0214 + 1634171-1634173,1634263-1634742 33 0.16
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870... 33 0.22
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 31 0.50
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 31 0.66
05_04_0057 + 17543016-17543312 31 0.66
02_01_0160 + 1116160-1116678 28 4.7
08_02_0512 + 18012909-18013025,18013656-18013751,18014102-180143... 27 8.2
02_05_0461 - 29242711-29242864,29242992-29243059,29243500-292435... 27 8.2
>08_02_1578 -
27992848-27992893,27993431-27993515,27994107-27994240,
27994579-27994640,27994736-27994831,27994952-27995023
Length = 164
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
MG +EMY+KHAP TCRNF+EL RRGYY+N F
Sbjct: 18 MGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIF 51
>01_05_0478 -
22587881-22588021,22588126-22588266,22588436-22588643,
22589199-22589238,22589425-22589647,22590826-22590970,
22591053-22591156,22591298-22591396,22591506-22591684,
22591948-22592167
Length = 499
Score = 34.3 bits (75), Expect = 0.071
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G + +E++ K AP RNF++L GYY+ T F
Sbjct: 22 GPLDIELWPKEAPKAVRNFVQLCLEGYYDGTLF 54
>06_01_0214 + 1634171-1634173,1634263-1634742
Length = 160
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
+G I E++ AP T NF+ L GYY+ T F
Sbjct: 9 LGDIKCEVFCDQAPRTAENFLALCASGYYDGTIF 42
>08_02_1563 +
27886202-27886446,27886533-27886618,27886942-27887030,
27887193-27887432,27887527-27887648,27888103-27888178,
27888276-27888383,27888465-27888641,27888959-27889176,
27889313-27889445,27889584-27889807,27890052-27890205,
27890297-27890380
Length = 651
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
MG I L +Y + P T NF R GYY+N F
Sbjct: 504 MGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIF 537
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G + LE++ P TC NF+ GYYN F
Sbjct: 354 GDLNLELHCDITPRTCENFLTHCENGYYNGLIF 386
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
+G I ++++ PLT +NF++L + YYN F
Sbjct: 9 VGDIEVDLHTDMCPLTTKNFLKLCKMKYYNGCLF 42
>05_04_0057 + 17543016-17543312
Length = 98
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 262 CRSKGGTSSRWEASVTWAALWTIGEAPADRLVNLDQCGVPQRR 134
C KGG RW AS A + P+ V +D+CG P RR
Sbjct: 17 CGLKGGGGQRWAASPEAGA--EVDSVPSLVEVEVDRCGPPGRR 57
>02_01_0160 + 1116160-1116678
Length = 172
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 474 PMGKIMLEMYWKHAPLTCRNFMEL 545
P G+I++E+Y K P T NF L
Sbjct: 16 PAGRIVMELYAKDVPRTAENFRAL 39
>08_02_0512 +
18012909-18013025,18013656-18013751,18014102-18014389,
18014551-18014750,18015313-18015548,18015809-18015951,
18016059-18016130,18016231-18016458
Length = 459
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +3
Query: 483 KIMLEMYWKHAPLTCRNFMELVRRGYYN 566
+I+L+ Y +AP+T NF++LV R +Y+
Sbjct: 281 RIVLDGY--NAPVTAGNFLDLVERKFYD 306
>02_05_0461 -
29242711-29242864,29242992-29243059,29243500-29243589,
29244026-29244733
Length = 339
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 297 ATNRQQHRFGSYVDQREAHRAGG 229
A NRQ RF SYV+ E AGG
Sbjct: 314 AYNRQLQRFLSYVNSEEKEAAGG 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,993,714
Number of Sequences: 37544
Number of extensions: 379264
Number of successful extensions: 1018
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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