Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0604
         (578 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    33   0.007
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    24   3.1  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   4.1  
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    23   5.4  
AJ000675-1|CAA04232.1|  600|Anopheles gambiae infection responsi...    23   5.4  
AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          23   7.2  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   7.2  
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              23   9.5  

>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 33.1 bits (72), Expect = 0.007
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = -3

Query: 459 TAGAKQGCLLSPLLFIVVLDDV 394
           T+G  QGC+LSPLLF + ++DV
Sbjct: 669 TSGVPQGCVLSPLLFSLFINDV 690


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 203 VDDRGGTGRPFSQLRPVWSSS 141
           + DRG    PF +  P WSS+
Sbjct: 795 IPDRGWIIMPFHESNPAWSSA 815


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 281 STDSAPMSIKGRHIEQVGSFCYLGSIVDDR 192
           +  S  + +    IE +    YLG I+DDR
Sbjct: 686 TVQSGSIRVGDERIESIRHLKYLGVIIDDR 715


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1977

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 398  SSSTTINSKGDSKQPCLAPAVTTILSNGKNYVG 496
            SSST ++S   +      PAV    SN  N +G
Sbjct: 1881 SSSTMVSSAVSNSAVATGPAVNNGTSNNNNALG 1913


>AJ000675-1|CAA04232.1|  600|Anopheles gambiae infection responsive
           serine proteaselike protein protein.
          Length = 600

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 182 RCLPYRPQCCPSNRSFP 232
           RC  Y   CCP N +FP
Sbjct: 110 RCPAYEEVCCPKN-AFP 125


>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 548 YQFHKISACQRCMFPIHFQHNFSHWIISWSPQAPSK 441
           Y +H +   + C+ P H+  N SH   S   Q+P +
Sbjct: 111 YAYH-LKKDEVCINPYHYARNESHSQHSQQQQSPQQ 145


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +2

Query: 371 HLQVTLRITSSSTTINSKGDSKQPCLAPAVTTILSNGKNY 490
           H ++ +R+TS+  TI+ +       + P   T+  + KN+
Sbjct: 847 HRKLAMRVTSAYRTISYEAVCVIASMMPLCITLEEDSKNF 886


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 133 NDVEELH-TGLS*LNGLPVPPLSSTMLPK*QKLPTCS 240
           ++ EEL+ T L+  +GL VPP+    L    KLP+ S
Sbjct: 73  DEEEELNCTILAGPSGLAVPPMGKVPLVVLDKLPSQS 109


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,731
Number of Sequences: 2352
Number of extensions: 14067
Number of successful extensions: 33
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55086417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)