Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0604
(578 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY070975-1|AAL48597.1| 176|Drosophila melanogaster RE07451p pro... 62 4e-10
AE014296-107|AAF47391.1| 176|Drosophila melanogaster CG13892-PA... 62 4e-10
AY070988-1|AAL48610.1| 502|Drosophila melanogaster RE08109p pro... 40 0.002
AE014296-2031|AAF50009.1| 502|Drosophila melanogaster CG10907-P... 40 0.002
AY061295-1|AAL28843.1| 517|Drosophila melanogaster LD20635p pro... 35 0.092
AE013599-2245|AAF58019.1| 517|Drosophila melanogaster CG7747-PA... 35 0.092
AF132148-1|AAD34736.1| 653|Drosophila melanogaster unknown prot... 33 0.37
AE014297-3634|AAF56342.1| 653|Drosophila melanogaster CG5808-PA... 33 0.37
BT023128-1|AAY55544.1| 332|Drosophila melanogaster IP03604p pro... 31 0.85
AY058355-1|AAL13584.1| 332|Drosophila melanogaster GH12692p pro... 31 0.85
AE014298-1386|AAF46536.1| 332|Drosophila melanogaster CG1889-PA... 31 0.85
AY051909-1|AAK93333.1| 637|Drosophila melanogaster LD39850p pro... 30 2.6
AE013599-3904|AAF47231.2| 637|Drosophila melanogaster CG3511-PA... 30 2.6
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 29 4.5
BT011377-1|AAR96169.1| 958|Drosophila melanogaster LP10202p pro... 28 7.9
AY051933-1|AAK93357.1| 739|Drosophila melanogaster LD41490p pro... 28 7.9
AE014297-1897|AAS65152.1| 959|Drosophila melanogaster CG3563-PB... 28 7.9
AE014297-1893|AAF55097.2| 1153|Drosophila melanogaster CG3563-PA... 28 7.9
AE014296-1272|AAO41272.1| 480|Drosophila melanogaster CG16992-P... 28 7.9
>AY070975-1|AAL48597.1| 176|Drosophila melanogaster RE07451p
protein.
Length = 176
Score = 62.5 bits (145), Expect = 4e-10
Identities = 25/34 (73%), Positives = 28/34 (82%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
MG+I +E+YWKHAP TCRNF EL RRGYYNN F
Sbjct: 29 MGEITVELYWKHAPNTCRNFAELSRRGYYNNVVF 62
Score = 32.3 bits (70), Expect = 0.49
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 89 GIPDKSWQPPVVVIETTLRNSTL 157
GIPDK+WQP V +ET++ T+
Sbjct: 12 GIPDKAWQPHFVTLETSMGEITV 34
>AE014296-107|AAF47391.1| 176|Drosophila melanogaster CG13892-PA
protein.
Length = 176
Score = 62.5 bits (145), Expect = 4e-10
Identities = 25/34 (73%), Positives = 28/34 (82%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
MG+I +E+YWKHAP TCRNF EL RRGYYNN F
Sbjct: 29 MGEITVELYWKHAPNTCRNFAELSRRGYYNNVVF 62
Score = 32.3 bits (70), Expect = 0.49
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 89 GIPDKSWQPPVVVIETTLRNSTL 157
GIPDK+WQP V +ET++ T+
Sbjct: 12 GIPDKAWQPHFVTLETSMGEITV 34
>AY070988-1|AAL48610.1| 502|Drosophila melanogaster RE08109p
protein.
Length = 502
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
+G I +E++ + P CRNF++L GYY NT+F
Sbjct: 21 VGDIDIELWARECPKACRNFVQLCLEGYYKNTEF 54
>AE014296-2031|AAF50009.1| 502|Drosophila melanogaster CG10907-PA
protein.
Length = 502
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
+G I +E++ + P CRNF++L GYY NT+F
Sbjct: 21 VGDIDIELWARECPKACRNFVQLCLEGYYKNTEF 54
>AY061295-1|AAL28843.1| 517|Drosophila melanogaster LD20635p
protein.
Length = 517
Score = 34.7 bits (76), Expect = 0.092
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
+G + LE++ P C NF++ GYYNN F
Sbjct: 288 LGPLNLELFCDQTPRACDNFIKHCANGYYNNVMF 321
>AE013599-2245|AAF58019.1| 517|Drosophila melanogaster CG7747-PA
protein.
Length = 517
Score = 34.7 bits (76), Expect = 0.092
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
+G + LE++ P C NF++ GYYNN F
Sbjct: 288 LGPLNLELFCDQTPRACDNFIKHCANGYYNNVMF 321
>AF132148-1|AAD34736.1| 653|Drosophila melanogaster unknown
protein.
Length = 653
Score = 32.7 bits (71), Expect = 0.37
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
MG + ++++ P+ C NF++L R YYN F
Sbjct: 9 MGDLTVDLFISERPIACLNFLKLCRLKYYNFNLF 42
>AE014297-3634|AAF56342.1| 653|Drosophila melanogaster CG5808-PA
protein.
Length = 653
Score = 32.7 bits (71), Expect = 0.37
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
MG + ++++ P+ C NF++L R YYN F
Sbjct: 9 MGDLTVDLFISERPIACLNFLKLCRLKYYNFNLF 42
>BT023128-1|AAY55544.1| 332|Drosophila melanogaster IP03604p
protein.
Length = 332
Score = 31.5 bits (68), Expect = 0.85
Identities = 24/86 (27%), Positives = 42/86 (48%)
Frame = +3
Query: 96 RINHGNHPLL*LKRR*GTPHWSKLTKRSAGASPIVHNAAQVTEASHLLDVPPFDRHRSRI 275
R+ N+ + +K + G+ + R AG++P+V A+ AS LD+ P + +
Sbjct: 53 RMQSLNNEIASVKEQIGSLQEQLVDLRRAGSAPVVGLASPNALASRFLDIEP--QLLANG 110
Query: 276 GAAADWLLGGKCHQQSRCPLGLHPRS 353
GAAA + C +Q + + PRS
Sbjct: 111 GAAAVPITPANCLKQQHGVVRIRPRS 136
>AY058355-1|AAL13584.1| 332|Drosophila melanogaster GH12692p
protein.
Length = 332
Score = 31.5 bits (68), Expect = 0.85
Identities = 24/86 (27%), Positives = 42/86 (48%)
Frame = +3
Query: 96 RINHGNHPLL*LKRR*GTPHWSKLTKRSAGASPIVHNAAQVTEASHLLDVPPFDRHRSRI 275
R+ N+ + +K + G+ + R AG++P+V A+ AS LD+ P + +
Sbjct: 53 RMQSLNNEIASVKEQIGSLQEQLVDLRRAGSAPVVGLASPNALASRFLDIEP--QLLANG 110
Query: 276 GAAADWLLGGKCHQQSRCPLGLHPRS 353
GAAA + C +Q + + PRS
Sbjct: 111 GAAAVPITPANCLKQQHGVVRIRPRS 136
>AE014298-1386|AAF46536.1| 332|Drosophila melanogaster CG1889-PA,
isoform A protein.
Length = 332
Score = 31.5 bits (68), Expect = 0.85
Identities = 24/86 (27%), Positives = 42/86 (48%)
Frame = +3
Query: 96 RINHGNHPLL*LKRR*GTPHWSKLTKRSAGASPIVHNAAQVTEASHLLDVPPFDRHRSRI 275
R+ N+ + +K + G+ + R AG++P+V A+ AS LD+ P + +
Sbjct: 53 RMQSLNNEIASVKEQIGSLQEQLVDLRRAGSAPVVGLASPNALASRFLDIEP--QLLANG 110
Query: 276 GAAADWLLGGKCHQQSRCPLGLHPRS 353
GAAA + C +Q + + PRS
Sbjct: 111 GAAAVPITPANCLKQQHGVVRIRPRS 136
>AY051909-1|AAK93333.1| 637|Drosophila melanogaster LD39850p
protein.
Length = 637
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G I + +++K P T NF + GYYN F
Sbjct: 491 GDIHMRLFFKEVPKTVENFCVHAKNGYYNGHIF 523
>AE013599-3904|AAF47231.2| 637|Drosophila melanogaster CG3511-PA
protein.
Length = 637
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G I + +++K P T NF + GYYN F
Sbjct: 491 GDIHMRLFFKEVPKTVENFCVHAKNGYYNGHIF 523
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 474 DNIVVTAGAKQGCLLSPLLFIVVLDDVMR 388
+ V G KQG LSP+LF +V+D ++R
Sbjct: 531 EEFVPARGVKQGDPLSPILFNLVMDRLLR 559
>BT011377-1|AAR96169.1| 958|Drosophila melanogaster LP10202p
protein.
Length = 958
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 359 SPCRHLQVTLRITSSSTTINSKGDSKQPCLAPAVTTILSNGKNYVGNVLETCTF 520
S + LQ + SSS+ S S++ L+ A TT+LSNG NV+ TF
Sbjct: 362 SRVQQLQQQQQSKSSSSGSQSDYSSQRNFLSSA-TTVLSNGSRPSSNVISNNTF 414
>AY051933-1|AAK93357.1| 739|Drosophila melanogaster LD41490p
protein.
Length = 739
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 359 SPCRHLQVTLRITSSSTTINSKGDSKQPCLAPAVTTILSNGKNYVGNVLETCTF 520
S + LQ + SSS+ S S++ L+ A TT+LSNG NV+ TF
Sbjct: 143 SRVQQLQQQQQSKSSSSGSQSDYSSQRNFLSSA-TTVLSNGSRPSSNVISNNTF 195
>AE014297-1897|AAS65152.1| 959|Drosophila melanogaster CG3563-PB,
isoform B protein.
Length = 959
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 359 SPCRHLQVTLRITSSSTTINSKGDSKQPCLAPAVTTILSNGKNYVGNVLETCTF 520
S + LQ + SSS+ S S++ L+ A TT+LSNG NV+ TF
Sbjct: 363 SRVQQLQQQQQSKSSSSGSQSDYSSQRNFLSSA-TTVLSNGSRPSSNVISNNTF 415
>AE014297-1893|AAF55097.2| 1153|Drosophila melanogaster CG3563-PA,
isoform A protein.
Length = 1153
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 359 SPCRHLQVTLRITSSSTTINSKGDSKQPCLAPAVTTILSNGKNYVGNVLETCTF 520
S + LQ + SSS+ S S++ L+ A TT+LSNG NV+ TF
Sbjct: 557 SRVQQLQQQQQSKSSSSGSQSDYSSQRNFLSSA-TTVLSNGSRPSSNVISNNTF 609
>AE014296-1272|AAO41272.1| 480|Drosophila melanogaster CG16992-PA
protein.
Length = 480
Score = 28.3 bits (60), Expect = 7.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 176 VCRCLPYRPQCCPSNRSFPPARCA 247
+C+ P CCP N+ P +RC+
Sbjct: 79 ICKLKPCIRFCCPRNKMMPNSRCS 102
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,935,493
Number of Sequences: 53049
Number of extensions: 619911
Number of successful extensions: 1592
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2296745289
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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