Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0604
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58755-8|AAB00697.1| 169|Caenorhabditis elegans Cyclophylin pro... 57 8e-09
AL023828-29|CAA19454.2| 483|Caenorhabditis elegans Hypothetical... 40 0.001
AF393636-1|AAM19304.1| 222|Caenorhabditis elegans cyclophilin-1... 40 0.001
Z46935-9|CAA87053.1| 523|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z36949-3|CAA85417.1| 523|Caenorhabditis elegans Hypothetical pr... 38 0.007
U36187-1|AAC06337.1| 523|Caenorhabditis elegans cyclophilin iso... 38 0.007
AF421146-1|AAL27008.1| 523|Caenorhabditis elegans cyclophilin M... 38 0.007
U34954-1|AAC47114.1| 147|Caenorhabditis elegans cyclophilin iso... 33 0.15
U23453-6|AAC46758.1| 147|Caenorhabditis elegans Cyclophylin pro... 33 0.15
U23453-5|AAK68671.1| 161|Caenorhabditis elegans Cyclophylin pro... 33 0.15
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 33 0.19
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 33 0.19
AL110500-6|CAB60429.1| 629|Caenorhabditis elegans Hypothetical ... 31 0.78
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 31 0.78
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 30 1.0
U27354-1|AAC47124.1| 201|Caenorhabditis elegans cyclophilin pro... 30 1.4
U00051-7|AAA91355.1| 201|Caenorhabditis elegans Cyclophylin pro... 30 1.4
U64844-6|ABC71797.1| 174|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z92784-1|CAB07192.1| 204|Caenorhabditis elegans Hypothetical pr... 29 2.4
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 29 2.4
U31948-1|AAC47126.1| 204|Caenorhabditis elegans cyclophilin iso... 29 2.4
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 29 2.4
AC024801-2|AAK68512.1| 176|Caenorhabditis elegans Hypothetical ... 28 5.5
Z70680-6|CAC42260.1| 318|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 27 9.6
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 27 9.6
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 27 9.6
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 27 9.6
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 27 9.6
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 27 9.6
U53339-5|AAA96201.1| 342|Caenorhabditis elegans Serpentine rece... 27 9.6
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 27 9.6
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 27 9.6
>U58755-8|AAB00697.1| 169|Caenorhabditis elegans Cyclophylin
protein 12 protein.
Length = 169
Score = 57.2 bits (132), Expect = 8e-09
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
MGKI LE+YW HAP TC+NF +L +R YYN T F
Sbjct: 18 MGKIALELYWNHAPRTCQNFSQLAKRNYYNGTIF 51
>AL023828-29|CAA19454.2| 483|Caenorhabditis elegans Hypothetical
protein Y17G7B.9 protein.
Length = 483
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G I +E++ K APL CRNF++L YY T F
Sbjct: 22 GDIEIELWTKEAPLACRNFIQLCMENYYKGTVF 54
>AF393636-1|AAM19304.1| 222|Caenorhabditis elegans cyclophilin-16
protein.
Length = 222
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G I +E++ K APL CRNF++L YY T F
Sbjct: 22 GDIEIELWTKEAPLACRNFIQLCMENYYKGTVF 54
>Z46935-9|CAA87053.1| 523|Caenorhabditis elegans Hypothetical
protein F59E10.2 protein.
Length = 523
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G + LE++ P C NF+ GYYNNTKF
Sbjct: 289 GPLNLELFAPKVPKACENFITHCSNGYYNNTKF 321
>Z36949-3|CAA85417.1| 523|Caenorhabditis elegans Hypothetical
protein F59E10.2 protein.
Length = 523
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G + LE++ P C NF+ GYYNNTKF
Sbjct: 289 GPLNLELFAPKVPKACENFITHCSNGYYNNTKF 321
>U36187-1|AAC06337.1| 523|Caenorhabditis elegans cyclophilin
isoform 4 protein.
Length = 523
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G + LE++ P C NF+ GYYNNTKF
Sbjct: 289 GPLNLELFAPKVPKACENFITHCSNGYYNNTKF 321
>AF421146-1|AAL27008.1| 523|Caenorhabditis elegans cyclophilin
MOG-6 protein.
Length = 523
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G + LE++ P C NF+ GYYNNTKF
Sbjct: 289 GPLNLELFAPKVPKACENFITHCSNGYYNNTKF 321
>U34954-1|AAC47114.1| 147|Caenorhabditis elegans cyclophilin
isoform 10 protein.
Length = 147
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G I +E+Y AP C NF+ L YYN F
Sbjct: 10 GDIKIELYVDDAPKACENFLALCASDYYNGCIF 42
>U23453-6|AAC46758.1| 147|Caenorhabditis elegans Cyclophylin
protein 10, isoform a protein.
Length = 147
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G I +E+Y AP C NF+ L YYN F
Sbjct: 10 GDIKIELYVDDAPKACENFLALCASDYYNGCIF 42
>U23453-5|AAK68671.1| 161|Caenorhabditis elegans Cyclophylin
protein 10, isoform b protein.
Length = 161
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G I +E+Y AP C NF+ L YYN F
Sbjct: 10 GDIKIELYVDDAPKACENFLALCASDYYNGCIF 42
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
F53B7.5b protein.
Length = 2892
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 172 NGLPVPPLSSTMLPK*QKLPTCSMC--LPLIDIGAESVLL 285
NG+ PP +ST K P CS C P++ +G S L
Sbjct: 1499 NGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYL 1538
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 172 NGLPVPPLSSTMLPK*QKLPTCSMC--LPLIDIGAESVLL 285
NG+ PP +ST K P CS C P++ +G S L
Sbjct: 1499 NGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYL 1538
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 172 NGLPVPPLSSTMLPK*QKLPTCSMC--LPLIDIGAESVLL 285
NG+ PP +ST K P CS C P++ +G S L
Sbjct: 1499 NGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYL 1538
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 32.7 bits (71), Expect = 0.19
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 172 NGLPVPPLSSTMLPK*QKLPTCSMC--LPLIDIGAESVLL 285
NG+ PP +ST K P CS C P++ +G S L
Sbjct: 1499 NGVTAPPTTSTTTVKDDTAPACSQCGRAPIVSVGTGSTYL 1538
>AL110500-6|CAB60429.1| 629|Caenorhabditis elegans Hypothetical
protein Y87G2A.6 protein.
Length = 629
Score = 30.7 bits (66), Expect = 0.78
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G I + ++ P T NF RRGYYN F
Sbjct: 483 GDITIRLFGDECPKTVENFCTHSRRGYYNGLTF 515
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 30.7 bits (66), Expect = 0.78
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 468 IVVTAGAKQGCLLSPLLFIVVLDDVMRRVTC 376
+ VT G +QG +SP LF L+ V R+++C
Sbjct: 93 VPVTKGVRQGDPISPNLFSACLEHVFRKLSC 123
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
+G ++++++ K P NF++L ++ YYN +F
Sbjct: 9 LGDLIIDLFVKERPRCSLNFLKLCKKKYYNLNQF 42
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
+G ++++++ K P NF++L ++ YYN +F
Sbjct: 9 LGDLIIDLFVKERPRCSLNFLKLCKKKYYNLNQF 42
>U27354-1|AAC47124.1| 201|Caenorhabditis elegans cyclophilin
protein.
Length = 201
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 474 PMGKIMLEMYWKHAPLTCRNFMELVRR 554
P+GKI++ ++ + P T +NF+EL +R
Sbjct: 38 PVGKIVIGLFGEVVPKTVKNFVELAQR 64
>U00051-7|AAA91355.1| 201|Caenorhabditis elegans Cyclophylin
protein 6 protein.
Length = 201
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 474 PMGKIMLEMYWKHAPLTCRNFMELVRR 554
P+GKI++ ++ + P T +NF+EL +R
Sbjct: 38 PVGKIVIGLFGEVVPKTVKNFVELAQR 64
>U64844-6|ABC71797.1| 174|Caenorhabditis elegans Hypothetical
protein T22F3.12 protein.
Length = 174
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 474 PMGKIMLEMYWKHAPLTCRNFMEL 545
P+GK++ E+ + P TC NF++L
Sbjct: 15 PLGKLVFELNTEKCPKTCENFVKL 38
>Z92784-1|CAB07192.1| 204|Caenorhabditis elegans Hypothetical
protein F31C3.1 protein.
Length = 204
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 474 PMGKIMLEMYWKHAPLTCRNFMELVRR 554
P+G+I++ ++ K P T NF+EL ++
Sbjct: 41 PIGRIVIGLFGKTVPKTATNFIELAKK 67
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = -3
Query: 459 TAGAKQGCLLSPLLFIVVLDDVM----RRVTCK 373
T G QG +LSPLLF + ++D+ +V CK
Sbjct: 74 TCGVPQGAVLSPLLFGIYVNDISSILPEKVACK 106
>U31948-1|AAC47126.1| 204|Caenorhabditis elegans cyclophilin
isoform 5 protein.
Length = 204
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 474 PMGKIMLEMYWKHAPLTCRNFMELVRR 554
P+G+I++ ++ K P T NF+EL ++
Sbjct: 41 PIGRIVIGLFGKTVPKTATNFIELAKK 67
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = -3
Query: 507 SNTFPT*FFPLDNIVVTAGAKQGCLLSPLLFIVVLDDVMRRVTCKCRQG 361
S TF T F + VT G +QG +SP LF L+ V R++ K +G
Sbjct: 504 STTF-TPFHKNVTVPVTRGVRQGDPISPNLFSACLEHVFRQLNWKHFKG 551
>AC024801-2|AAK68512.1| 176|Caenorhabditis elegans Hypothetical
protein Y50D7A.5 protein.
Length = 176
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -1
Query: 578 KFSVVVIASTYQFHKISACQRCM---FPIHFQHN 486
+F+ ++++ YQ+ + CQ CM PI FQ N
Sbjct: 102 EFAPTILSADYQYTCVEICQSCMPGSAPICFQRN 135
>Z70680-6|CAC42260.1| 318|Caenorhabditis elegans Hypothetical
protein C25G4.11 protein.
Length = 318
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 334 RGHRLC**HLPPSNQSAAAPIRLLCRSKGGTSS 236
R HRLC +LP R+L KGG SS
Sbjct: 264 RSHRLCLYYLPEIFSCLDRAYRMLSNEKGGVSS 296
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 356 GSPCRHLQVTLRITSSSTTINSKGDSKQPCLAPAVTTILSNGK 484
GS QV R TSS IN+K D + C A VT + NG+
Sbjct: 4829 GSKIIGYQVQYRDTSSGRWINAKMDLSEQCHA-RVTGLRQNGE 4870
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 356 GSPCRHLQVTLRITSSSTTINSKGDSKQPCLAPAVTTILSNGK 484
GS QV R TSS IN+K D + C A VT + NG+
Sbjct: 5358 GSKIIGYQVQYRDTSSGRWINAKMDLSEQCHA-RVTGLRQNGE 5399
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 356 GSPCRHLQVTLRITSSSTTINSKGDSKQPCLAPAVTTILSNGK 484
GS QV R TSS IN+K D + C A VT + NG+
Sbjct: 5039 GSKIIGYQVQYRDTSSGRWINAKMDLSEQCHA-RVTGLRQNGE 5080
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 356 GSPCRHLQVTLRITSSSTTINSKGDSKQPCLAPAVTTILSNGK 484
GS QV R TSS IN+K D + C A VT + NG+
Sbjct: 4829 GSKIIGYQVQYRDTSSGRWINAKMDLSEQCHA-RVTGLRQNGE 4870
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 356 GSPCRHLQVTLRITSSSTTINSKGDSKQPCLAPAVTTILSNGK 484
GS QV R TSS IN+K D + C A VT + NG+
Sbjct: 5358 GSKIIGYQVQYRDTSSGRWINAKMDLSEQCHA-RVTGLRQNGE 5399
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 356 GSPCRHLQVTLRITSSSTTINSKGDSKQPCLAPAVTTILSNGK 484
GS QV R TSS IN+K D + C A VT + NG+
Sbjct: 5039 GSKIIGYQVQYRDTSSGRWINAKMDLSEQCHA-RVTGLRQNGE 5080
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 356 GSPCRHLQVTLRITSSSTTINSKGDSKQPCLAPAVTTILSNGK 484
GS QV R TSS IN+K D + C A VT + NG+
Sbjct: 4248 GSKIIGYQVQYRDTSSGRWINAKMDLSEQCHA-RVTGLRQNGE 4289
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 468 IVVTAGAKQGCLLSPLLFIVVLDDVMRRVT 379
+ VT G +QG +SP LF L+ V R+++
Sbjct: 571 VPVTKGVRQGDPISPNLFSACLEHVFRKLS 600
>U53339-5|AAA96201.1| 342|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 16 protein.
Length = 342
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 149 SSSTSFQLQQRVVAMIYPVYRHSNNLACSYF 57
+S+T+F + ++V +IY V ++ CSYF
Sbjct: 12 NSATAFSVGYQIVYLIYVVLSVTSIFTCSYF 42
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 468 IVVTAGAKQGCLLSPLLFIVVLDDVMRRVT 379
+ VT G +QG +SP LF L+ V R+++
Sbjct: 742 VPVTKGVRQGDPISPNLFSACLEHVFRKLS 771
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 468 IVVTAGAKQGCLLSPLLFIVVLDDVMRRVT 379
+ VT G +QG +SP LF L+ V R+++
Sbjct: 481 VPVTKGVRQGDPISPNLFSACLEHVFRKLS 510
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,203
Number of Sequences: 27780
Number of extensions: 299734
Number of successful extensions: 769
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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