Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0604
(578 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase, pu... 56 2e-08
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 36 0.015
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc... 36 0.020
At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase cyc... 36 0.026
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc... 31 0.56
At3g49210.1 68416.m05378 expressed protein 31 0.73
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 30 1.3
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 30 1.3
At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase cyc... 30 1.3
At3g10710.1 68416.m01289 pectinesterase family protein contains ... 29 3.0
At1g66440.1 68414.m07548 DC1 domain-containing protein contains ... 28 3.9
At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase cyc... 28 5.2
At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase / c... 27 6.8
At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro... 27 6.8
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 27 9.0
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 27 9.0
At3g61910.1 68416.m06953 no apical meristem (NAM) family protein... 27 9.0
At3g01480.1 68416.m00072 peptidyl-prolyl cis-trans isomerase, pu... 27 9.0
>At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
contains Pfam domain, PF00160: peptidyl-prolyl cis-trans
isomerase, cyclophilin-type
Length = 164
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
MG +EMY+KH+P TCRNF+EL RRGYY+N F
Sbjct: 18 MGPFTVEMYYKHSPRTCRNFLELSRRGYYDNVLF 51
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 36.3 bits (80), Expect = 0.015
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
+G I+++++ PLTC+NF++L + YYN F
Sbjct: 9 LGDIVIDLHSDKCPLTCKNFLKLCKIKYYNGCLF 42
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 595
Score = 35.9 bits (79), Expect = 0.020
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G + +E++ AP C NF+ L RGYYN F
Sbjct: 353 GDLNIELHCDIAPRACENFITLCERGYYNGVAF 385
>At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 504
Score = 35.5 bits (78), Expect = 0.026
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 480 GKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
G I +E++ K AP + RNF++L GY++NT F
Sbjct: 22 GPIDVELWPKEAPKSVRNFVQLCLEGYFDNTIF 54
>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to SP|P87051
Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
(Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
Pfam profiles PF00160: peptidyl-prolyl cis-trans
isomerase cyclophilin-type, PF00400: WD domain G-beta
repeat
Length = 631
Score = 31.1 bits (67), Expect = 0.56
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
+G I +++Y + P T NF R GYY+N F
Sbjct: 484 LGDIHMKLYPEECPKTVENFTTHCRNGYYDNHLF 517
>At3g49210.1 68416.m05378 expressed protein
Length = 518
Score = 30.7 bits (66), Expect = 0.73
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 307 LPPSNQSAAAPIRLLCRSKGGTSSRWEASVTWAALWTIGEAPADRL 170
LP N+S++ RL+ S+G + W V W+A+ + D L
Sbjct: 191 LPNQNRSSSRSSRLMAGSRGDSRFLWLVMVIWSAIMLVLNTVCDAL 236
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 50 QDKNKNMLGYSNAGIPDKSWQPPVVVIET 136
Q +N+LG +N+ +P + WQP V+ T
Sbjct: 808 QKSERNLLGKANSNVPPQLWQPSSGVLMT 836
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 50 QDKNKNMLGYSNAGIPDKSWQPPVVVIET 136
Q +N+LG +N+ +P + WQP V+ T
Sbjct: 808 QKSERNLLGKANSNVPPQLWQPSSGVLMT 836
>At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 160
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 477 MGKIMLEMYWKHAPLTCRNFMELVRRGYYNNTKF 578
+G I E++ P + NF+ L GYY+ T F
Sbjct: 9 LGDIKCEIFCDEVPKSAENFLALCASGYYDGTIF 42
>At3g10710.1 68416.m01289 pectinesterase family protein contains
similarity to pectinesterase GB:AAB57671 [Citrus
sinensis]; contains Pfam profile: PF01095 pectinesterase
Length = 561
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 374 LQVTLRITSSSTTINSKGDSKQPCLAPAVTTILSNGKNYVGNVLETCTFDMQKF 535
L +T+ +++ T +S GD P L + T LS+ Y +ET DM+ F
Sbjct: 140 LDLTIDNLNNTLTSSSNGDVTVPELVDDLRTWLSSAGTYQRTCVETLAPDMRPF 193
>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 726
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 428 DSKQP-CLAPAVTTILSNGKNYV 493
++KQP CLAP LSNGKN V
Sbjct: 150 ETKQPICLAPQFKLELSNGKNLV 172
>At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 290
Score = 27.9 bits (59), Expect = 5.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +3
Query: 474 PMGKIMLEMYWKHAPLTCRNFMEL 545
P+G+++L +Y +H P+T F +
Sbjct: 84 PLGRVVLGLYGRHVPITVSTFKRM 107
>At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP2) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443757|gb|AAB71402; similar
to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34790
Length = 174
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 474 PMGKIMLEMYWKHAPLTCRNFMEL 545
P GKI++E+Y P T NF L
Sbjct: 17 PAGKIVMELYTDKTPKTAENFRAL 40
>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
protease identical to SP|P43297 Cysteine proteinase
RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
thiol protease RD21A SP:P43297 from [Arabidopsis
thaliana]
Length = 462
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 191 PYRPQCCPSNRSFPPARCASL*ST*EPNRCCC 286
P P P + PP +C S + E N CCC
Sbjct: 358 PPNPGPSPPSPIKPPTQCDSYYTCPESNTCCC 389
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 276 GAAADWLLGGKCHQQSRCP 332
G++ DWL+GG+ SR P
Sbjct: 701 GSSDDWLIGGRSSSSSRAP 719
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 541 SIKFLHVKGACFQYISNIIFPIG 473
++KFL + +C +YIS + FP G
Sbjct: 543 NLKFLKIYNSCSKYISGLNFPKG 565
>At3g61910.1 68416.m06953 no apical meristem (NAM) family protein no
apical meristem (NAM) - Petunia hybrida, EMBL:PHDNANAM
Length = 334
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 349 GPRQSLSAFTGDSAHHIIKHYYKQQGR-QQATLLGACGDHDI 471
G R++L + G + H + + R ++ L+ +CGDHD+
Sbjct: 112 GMRKTLVFYKGRAPHGQKSDWIMHEYRLDESVLISSCGDHDV 153
>At3g01480.1 68416.m00072 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase,
chloroplast precursor (40 kDa thylakoid lumen PPIase, 40
kDa thylakoid lumen rotamase) [Spinacia oleracea]
SWISS-PROT:O49939
Length = 437
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +3
Query: 483 KIMLEMYWKHAPLTCRNFMELVRRGYYN 566
+I+L+ Y +AP+T NF++LV R +Y+
Sbjct: 259 RIVLDGY--NAPVTAGNFVDLVERHFYD 284
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,119,659
Number of Sequences: 28952
Number of extensions: 276457
Number of successful extensions: 674
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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