Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0603
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.0  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    21   9.0  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 235 GFHYAGDGKLGGIVQ-PNDGQCHMENNAY 318
           G+HY+GDG  G +   PN    H    AY
Sbjct: 392 GYHYSGDG--GEVAHLPNTHMGHEPGAAY 418


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 235 GFHYAGDGKLGGIVQ-PNDGQCHMENNAY 318
           G+HY+GDG  G +   PN    H    AY
Sbjct: 340 GYHYSGDG--GEVAHLPNTHMGHEPGAAY 366


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 296  HWPSLGCTIPP 264
            +WP+ G TIPP
Sbjct: 1078 NWPTQGTTIPP 1088


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 287 SLGCTIPPSFPSPA 246
           S+G T PP +P PA
Sbjct: 156 SMGLTRPPMYPFPA 169



 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 210 PTGLVPPADLLAAH 169
           PTGL+PP   L+ H
Sbjct: 226 PTGLIPPHPGLSPH 239



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 247 AGDGKLGGIVQPNDGQCHMENNAYT 321
           AGDG  G     N G C    +A+T
Sbjct: 644 AGDGNDGNQSDDNLGSCGSMGDAHT 668


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 287 SLGCTIPPSFPSPA 246
           S+G T PP +P PA
Sbjct: 48  SMGLTRPPMYPFPA 61



 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 210 PTGLVPPADLLAAH 169
           PTGL+PP   L+ H
Sbjct: 118 PTGLIPPHPGLSPH 131



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 247 AGDGKLGGIVQPNDGQCHMENNAYT 321
           AGDG  G     N G C    +A+T
Sbjct: 536 AGDGNDGNQSDDNLGSCGSMGDAHT 560


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 265 GGIVQPNDGQC 297
           GG VQP+ G C
Sbjct: 40  GGAVQPDPGSC 50


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 394 IFAVTAEQISVYEELSKHIEGSSSGILS 477
           I+ ++ +   +   +S HI+GS   ILS
Sbjct: 61  IYGLSTKPKIMQGAISNHIQGSKPNILS 88


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,607
Number of Sequences: 336
Number of extensions: 3098
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)