Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0603
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    34   0.021
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    30   0.34 
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    28   1.4  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    27   2.4  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   3.2  
SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz...    27   3.2  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   5.6  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   5.6  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   5.6  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   7.4  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.4  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   7.4  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    25   7.4  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   7.4  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    25   9.7  
SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|ch...    25   9.7  

>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
 Frame = +1

Query: 331  LQDYPSISQINLKVKKNAINVIFAVTAEQI-SVYEELSKHIE-GSSSGILSEDSDNVVDL 504
            L+D   I  ++L + +  ++   ++  EQ+ ++ E L K IE   +   L  DSDN++DL
Sbjct: 1112 LEDEHYIKLVSLSILEKLVDCSPSIIDEQVDTILEALRKIIELRKTEKTLKTDSDNILDL 1171

Query: 505  VREQYNKITSTVEMK 549
            VR    ++  T+++K
Sbjct: 1172 VRSAL-RVLFTMKLK 1185


>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 25  NCAAPYGFRNQMSLSKDTDFFEKAVAQADVSG 120
           N   P+ F   +SL+  T+FFEK V+   ++G
Sbjct: 339 NVTNPFDFMENISLAGKTNFFEKKVSDYQIAG 370


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +1

Query: 403 VTAEQISVYEELSKHIEGSSSGILSEDSDNVVDLVREQYNKITSTVEMKD 552
           VTA+    Y+   ++++     IL+   DN++D +++  +   +  E+KD
Sbjct: 271 VTADTNEHYDRAMQYLKQLVENILNRSLDNLIDTLKQVQHDAENDEELKD 320


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/69 (21%), Positives = 35/69 (50%)
 Frame = +1

Query: 418 ISVYEELSKHIEGSSSGILSEDSDNVVDLVREQYNKITSTVEMKDSSSGRRSNCVLLIVS 597
           +++   LS + +G SSG++ +  D V  +V    + + + +  +   +GR +   L+ + 
Sbjct: 134 VAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLL 193

Query: 598 RRQGSRANK 624
            R+G   N+
Sbjct: 194 LRKGYAFNR 202


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 255  VPGVMEAGVGREDEQPTGLVPPADLLAAH--DRLHDRVEPSFGRVQVTRNVRLCD 97
            V  +MEAG+G E          A L A +  +R+ + ++  +GR+ + + +R CD
Sbjct: 1295 VISLMEAGLGLERAHMAFYTELAILYAKYKPERMMEHLKLFWGRLNMAKVIRACD 1349


>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 124 LDAPEGGFDAIMQAVVCRQQIGWRDQARRLLVFSTDAGFHYAGDGKLGGIVQPND 288
           LDAP+  FD ++ A     ++G +D+  ++L  +    ++  G G L   V+ +D
Sbjct: 166 LDAPDSQFDCLVLAAAGLFRLGLKDRIAQML--TAPFVYYAVGQGALAVEVRADD 218


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +1

Query: 316 YTHSTLQDYPSISQINLKVKKNAINVIFAVTAEQISVYEELSKHIEGSSSGILSEDSDN 492
           Y  S +    SIS IN +  +   N++ ++  EQ  V E  +   E + + I++ ++ N
Sbjct: 569 YYSSLIDSSTSISNINFEAPRYKTNIVHSLNNEQKYVLEVKNGTSEKNPTRIVALENGN 627


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 352 SQINLKVKKNAINVIFAVTAEQISVYEELSKHIEGSSSGILSEDSDNV 495
           S +  + + N  N IF     Q+S   EL+ H++ S   I  E S+ V
Sbjct: 254 SPVVFQKQNNHTNTIFTFDVPQVSGSCELNLHLDTSGFPITVEGSNGV 301


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 318 HTLDP-SRLPQYFTDQPESEKKCYKRDIRGNSRTDQRVRRVEQTHRGVQQRHPQ 476
           +T  P S + +  T    S+ + Y+R  RG+++T + +   + T + V    PQ
Sbjct: 545 YTYQPFSSVEKIETPPNNSKNQTYRRSSRGSNKTRKSISHSKNTDKHVGNELPQ 598


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 379 NAINVIFAVTAEQISVYEELSKHIE 453
           + +NV+     + +S+ EE+S+HI+
Sbjct: 605 DTVNVLLTTLMDNVSISEEVSEHIK 629


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +1

Query: 304 ENNAYTHST-LQDYPSISQINLKVKKNAINVIFAVTAEQISVYEELSKHIEGSSSGILS- 477
           E+N Y     L D   I  ++  ++++  +++F+     I+ Y EL + +  SS+  +  
Sbjct: 279 EDNVYASQIHLVDILEILTVHCDLEES-FSIVFSTQPRFIARYNELVQAVSSSSNSEIDE 337

Query: 478 -EDSDNVVDLVREQYNKITS 534
            ED++ +   + E+ N + +
Sbjct: 338 VEDAETIDSKILEKRNDLNN 357


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 327  DPSRLPQYFTDQPESEKK 380
            DP  LPQY  D  E E+K
Sbjct: 1317 DPPDLPQYLLDSREKERK 1334


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 127 DAPEGGFDAIMQAVVCRQQIGWRDQARRLL 216
           D PE G+DAI +  + R +I W    +R+L
Sbjct: 335 DGPEKGYDAIKKHRIYR-RIDWNKLEKRML 363


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 446  TSRG--PAAASSVRTPTTLSISYGSNTIKLRQ 535
            TS G  PAA++S   PTT + S+G++   + +
Sbjct: 944  TSEGTAPAASASAPAPTTSAFSFGASNSSMNK 975


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 165 RLHDRVEPSFGRVQVTRNVRLC-DCFF 88
           +LHD+    FG  Q+ + +  C  CFF
Sbjct: 302 KLHDKRRRDFGEAQLNQYLNYCGGCFF 328


>SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 144 PSFGRVQVTRNVRLCDCFFKEVSIL 70
           P  GR++  RN+R+   FF   SIL
Sbjct: 120 PLIGRLEFLRNIRISLSFFSFFSIL 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,352
Number of Sequences: 5004
Number of extensions: 53846
Number of successful extensions: 216
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)