Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0603
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0769 + 5908942-5908946,5909085-5909666,5910370-5910429,591... 32 0.47
09_04_0291 + 16433097-16433942,16434708-16434851,16435226-164353... 31 0.82
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 31 1.1
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 1.9
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 30 1.9
11_04_0393 + 17185845-17186042,17189342-17189534,17190513-171905... 29 2.5
02_01_0712 + 5329016-5329744,5330477-5330521 29 2.5
10_08_0086 - 14729240-14729494,14730107-14730307 29 4.4
03_02_1038 - 13579407-13579466,13579630-13579739,13579819-135799... 28 5.8
03_01_0244 - 1900492-1901109,1901416-1902345 28 5.8
06_01_1045 - 8241862-8242881 28 7.6
>07_01_0769 +
5908942-5908946,5909085-5909666,5910370-5910429,
5910635-5910674,5910767-5910860,5911582-5911952
Length = 383
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 294 MSHGKQRLHTLDPSRLPQYFTDQP--ESEKKCYKRDIRGNSRTDQRVRRVEQTHRGVQQ 464
+ HG+QR H D R Q+ ++ +++ ++RD G+ DQ HR V++
Sbjct: 72 VGHGQQRSHQRDQERSHQHDQERSVERDQERSHQRDQEGSVERDQERSHQRDRHRSVKR 130
>09_04_0291 +
16433097-16433942,16434708-16434851,16435226-16435390,
16435551-16435562
Length = 388
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 179 WRHTTACMIASNPPSGASKLPETSACATAFSKKSVSLL 66
WRH S+PP A+ LP +A A A K ++ +
Sbjct: 41 WRHLGELDFVSSPPPAAASLPVAAATAVACDKAAIDAI 78
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Frame = +1
Query: 229 DAGFHYAGDGKLGGIVQPNDGQCHMENNAYTHS---TLQDYPSISQINLKVKK-NAINVI 396
DA + G G + + PN + ++ENN++T + ++ S+ +NL + ++INV+
Sbjct: 116 DASNNNLGGGDIPYNLPPNLERLNLENNSFTGTLPYSISQMASLKYLNLGHNQLSSINVM 175
Query: 397 FAVTAEQISVYEELSKHIEGSSSGILSEDSDNVVDL--VREQYNKITSTVEM 546
F ++ +LS + + SG L + N+ L + Q N+ T T+++
Sbjct: 176 FNQLTNLATL--DLS---DNTFSGTLPDSFSNLTSLTMLHLQDNRFTGTIDV 222
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 215 SSSRPTPASITPGTESSAV*CSLMTANVTWKTT 313
SS+R TPA+ G E+SA S TA V W T+
Sbjct: 30 SSARRTPAAAAAGKENSASKPSKPTAAVRWSTS 62
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Frame = +1
Query: 388 NVIFAVTAEQISVYEELSKHIEGSSSGILSED------------SDNVVDLVREQYNKIT 531
NV A AEQ YEE+ + +E + + SE+ NV+ R + +I
Sbjct: 230 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASW-RII 288
Query: 532 STVEMKDSSSGRRSNCVLL 588
S++E K+ S G C L+
Sbjct: 289 SSIEQKEESRGNEDRCTLI 307
>11_04_0393 +
17185845-17186042,17189342-17189534,17190513-17190598,
17191123-17191254,17191930-17192094,17192397-17192687
Length = 354
Score = 29.5 bits (63), Expect = 2.5
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Frame = -3
Query: 291 AVIRLHYTAELSVPGVMEAGVGREDEQPTGLVPPADLLAAHD--RLHDRVEPSFGRVQ-V 121
A + L E+++ V A R+ P LV PAD+ D R + FG++ +
Sbjct: 77 ACVALTARTEIALRAV--AKTARDLGAPDVLVVPADITKVDDAKRAVEETVAHFGKLNHL 134
Query: 120 TRNVRL-CDCFFKEVSILTERHLIAETVRRGAV 25
N + CFF+E++ +T H + + GAV
Sbjct: 135 VANAGIWSSCFFEEITNITAFHNVIDLNFWGAV 167
>02_01_0712 + 5329016-5329744,5330477-5330521
Length = 257
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 255 VPGVMEAGVGREDEQPTGLVPPADLLAAHDRLHDRVEPS 139
+P V+E G G + E+P G V P + DR EP+
Sbjct: 161 IPVVVEEGRGGDREEPIGAVDPLPIAVEEGGESDRGEPA 199
>10_08_0086 - 14729240-14729494,14730107-14730307
Length = 151
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 194 LQPICWRHTTACMIASNPPSGASKLPETSACATAFSKKSVSLLSDI*LRK 45
LQP+CW + T+C+ S +LP A A + D LR+
Sbjct: 5 LQPVCWSNETSCLGKRPRQSPRRRLPSVFAGLAAMMTAEDGMSLDKQLRR 54
>03_02_1038 -
13579407-13579466,13579630-13579739,13579819-13579916,
13579991-13580077,13580412-13580517,13580946-13581030,
13581139-13581192,13581274-13581423,13581561-13581572
Length = 253
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 306 KQRLHTLDPSRLPQYFTDQPESEKKCYKRDIRGNSRTDQRV 428
K RL DP++ F +Q ES + YK D R + D +
Sbjct: 30 KTRLLLRDPAKAVTLFGEQDESVFQAYKADTRNAAELDPEI 70
>03_01_0244 - 1900492-1901109,1901416-1902345
Length = 515
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 342 VILKGRVCVSVVFHVTLAVIRLHYTAELSVPGVMEAGVGREDEQPTGLVPPADLLAA 172
+I +G ++V+ TLA + LH + +V ++A VGR + VP L A
Sbjct: 312 MIFRGTDAMAVLMEWTLARVVLHPDVQANVHRELDAVVGRSNTVAESAVPSLPYLQA 368
>06_01_1045 - 8241862-8242881
Length = 339
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 25 NCAAPYGFRNQMSLSKDTDFFEKAVAQADVSGNLDAPEGGFDA 153
N A P+ + +SL T+FFEK V + + + GG A
Sbjct: 287 NVANPFDWMELISLQGKTNFFEKRVGDYQKASVMSSLNGGASA 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,515,879
Number of Sequences: 37544
Number of extensions: 395282
Number of successful extensions: 1397
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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