Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0603
(662 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0) 156 2e-38
SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0) 134 5e-32
SB_31963| Best HMM Match : Integrin_beta (HMM E-Value=0) 77 2e-14
SB_43942| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_9673| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_58183| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026) 29 2.6
SB_57667| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09) 29 4.5
SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28) 29 4.5
SB_18028| Best HMM Match : Ribonuc_red_sm (HMM E-Value=1e-13) 29 4.5
SB_45702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)
Length = 467
Score = 156 bits (378), Expect = 2e-38
Identities = 77/147 (52%), Positives = 98/147 (66%), Gaps = 6/147 (4%)
Frame = +1
Query: 7 LISPCDN---CAAPYGFRNQMSLSKDTDFFEKAVAQADVSGNLDAPEGGFDAIMQAVVCR 177
L PC + C A YGF++ + L ++ F++ V + +SGNLD PEGGFDA+MQ VC
Sbjct: 75 LTKPCSDTSECVASYGFKHILPLVRNDTMFKEKVNEQKISGNLDEPEGGFDALMQVAVCD 134
Query: 178 QQIGW--RDQARRLLVFSTDAGFHYAGDGKLGGIVQPNDGQCHMENN-AYTHSTLQDYPS 348
QQIGW +RRL+VF TDA FH AGDGKLGGIV PNDGQCH+ N+ YT S DYPS
Sbjct: 135 QQIGWSVNGTSRRLVVFVTDAPFHLAGDGKLGGIVTPNDGQCHLSNSGVYTKSDELDYPS 194
Query: 349 ISQINLKVKKNAINVIFAVTAEQISVY 429
I+Q++ K+ + I IFAVT +Y
Sbjct: 195 IAQLHEKLLQKQIQPIFAVTGNVTDLY 221
>SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)
Length = 722
Score = 134 bits (325), Expect = 5e-32
Identities = 55/99 (55%), Positives = 77/99 (77%), Gaps = 2/99 (2%)
Frame = +1
Query: 40 YGFRNQMSLSKDTDFFEKAVAQADVSGNLDAPEGGFDAIMQAVVCRQQIGWRD--QARRL 213
+GF+N +SL+KD FE VA ++SGN+D+PEGG DA+MQ VC ++IGW + +ARRL
Sbjct: 181 FGFKNMLSLNKDPKKFESTVASLNISGNVDSPEGGLDALMQVAVCEKEIGWANKLEARRL 240
Query: 214 LVFSTDAGFHYAGDGKLGGIVQPNDGQCHMENNAYTHST 330
++F+TD+G+H+AGDG LGG+V PND +CH+E N Y ST
Sbjct: 241 VIFTTDSGYHFAGDGLLGGVVTPNDAKCHLEGNTYAAST 279
>SB_31963| Best HMM Match : Integrin_beta (HMM E-Value=0)
Length = 628
Score = 76.6 bits (180), Expect = 2e-14
Identities = 58/168 (34%), Positives = 88/168 (52%), Gaps = 3/168 (1%)
Frame = +1
Query: 28 CAAPYGFRNQMSLSKDTDFFEKAVAQADVSGNLDAPEGGFDAIMQAVVCRQQIGWRDQAR 207
C A YGF++ +SL +++ FE A+ D A G D + + V+ G D
Sbjct: 157 CVATYGFKHILSLVNNSNLFEVNGAKGDFLRFGCALLAG-DEVNKQVIS----GNIDDPE 211
Query: 208 RLLVFSTDAGFHYAGDGKLGGIVQPNDGQCHMEN-NAYTHSTLQDYPSISQINLKVKKNA 384
DA A +LGGIV PND QCH+ Y S DYP+++Q++ +++ +
Sbjct: 212 G----GFDALMQVAVCEELGGIVTPNDEQCHLNGLMTYDKSNEMDYPTLAQLHHQLQMHQ 267
Query: 385 INVIFAVTAEQISVYEELSKHIE--GSSSGILSEDSDNVVDLVREQYN 522
I IFAVT ++Y+ LS G+ +G L+ DS NVVDL++E Y+
Sbjct: 268 IQPIFAVTRNVSNIYKVLSTMWGDIGAVTGELALDSRNVVDLIQESYD 315
>SB_43942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 973
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 227 VEKTSSRRAWSLQPICWRHTTACMIASNPPSGAS 126
++K S + L +CWRH +C I PP S
Sbjct: 243 MKKRSPKMILRLHNLCWRHAMSCRIVPTPPKAIS 276
>SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 769
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 225 REDEQPTGLVPPADLLAAHDRLHDRVEPSFGRVQVT 118
RED+ P G P ++ AH+ L D V+P RV VT
Sbjct: 232 REDDMPPGQTPHTIMVFAHNDLVDAVQPG-DRVAVT 266
>SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 968
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 498 DNVVGVLTEDAAAGPLDVFAQLFVHADLFGCYR 400
DN + + +AG L F +F H + FGCY+
Sbjct: 521 DNTCKTTSVEFSAGALSTFDDVFKHVNSFGCYQ 553
>SB_9673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 268 GIVQPNDGQCHMENNA-YTHSTLQDYPSISQINLKVKKNAINVIFAVTAEQISVYEE 435
G+ + N QCH + ++ YT S QDY Q ++ K + + Q+S Y +
Sbjct: 40 GMTKNNSSQCHGKGSSVYTGSKRQDYVLAPQPPIQKLKQKSSAYSCIKESQVSYYTQ 96
>SB_58183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 262 LGGIVQPNDGQCHM 303
LGGIV PND QCH+
Sbjct: 1 LGGIVTPNDEQCHL 14
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 454 GSSSGILSEDSDNVVDLVREQYN 522
G+ +G L+ DS NVVDL++E Y+
Sbjct: 36 GAVTGELALDSRNVVDLIQESYD 58
>SB_26457| Best HMM Match : Band_41 (HMM E-Value=0.0026)
Length = 453
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/47 (23%), Positives = 29/47 (61%)
Frame = +1
Query: 433 ELSKHIEGSSSGILSEDSDNVVDLVREQYNKITSTVEMKDSSSGRRS 573
++++ + S+S + S + ++ D + +Y++ ST++ +SSS R+
Sbjct: 148 DVARELSISTSSVQSSGTSDISDSISSEYSQSISTIDGAESSSSSRA 194
>SB_57667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -1
Query: 233 ASVEKTSSRRAWSLQPICWRHTTACMIASNPPS 135
AS ++ S + L +CW H C PP+
Sbjct: 522 ASADRRSPKMILRLHNLCWHHAILCRTVLTPPT 554
>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3133
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 469 ILSEDSDNVVDLVREQYNKITSTVEMKDSSSGRRSNCVLLIVSRRQGSRANK*M*RTQGR 648
I++E ++N++ + NKI +++ D G R+ ++ RR G A R R
Sbjct: 1874 IIAELANNIIRVKAPMLNKIAMAIQLTD---GMRAGVIVAKFRRRPGEDAEGSEPRPSDR 1930
Query: 649 RH 654
RH
Sbjct: 1931 RH 1932
>SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09)
Length = 925
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 376 KNAINVIFAVTAEQISVYEELSKHIEGSSSGILSEDSDNVVDLVRE 513
K +N+ + S Y S S+SG+ +EDS V D V E
Sbjct: 830 KPGMNISYGDNISDTSDYSRQSSRRHSSASGVSNEDSGQVADHVDE 875
>SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28)
Length = 562
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +1
Query: 346 SISQINLKVKKNAINVIFAVTAEQISVYEELSKHIEGSSSGILSEDSDNVVDLVRE 513
+++ NL+ + +NVI AEQ EL + I+GSS + + +S VV ++E
Sbjct: 283 AVANQNLRTYQGKLNVIERSVAEQRRELAELKERIQGSS--VQASESGQVVLQLQE 336
>SB_18028| Best HMM Match : Ribonuc_red_sm (HMM E-Value=1e-13)
Length = 241
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 25 NCAAPYGFRNQMSLSKDTDFFEKAVAQADVSG 120
N P+ F +SL T+FFEK V + SG
Sbjct: 194 NVENPFDFMENISLEGKTNFFEKRVGEYQKSG 225
>SB_45702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -1
Query: 329 VECV*ALFSM*HWPSLGCTIPPSFPSPA*WKPASVEKTSSRRAWSLQP 186
+ C A + + + + P PSPA W S + ++ R WSL P
Sbjct: 239 MHCKRAAYQAGYCRAQSLVVQPVMPSPADWGWESSDNSTWRPLWSLLP 286
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,102,814
Number of Sequences: 59808
Number of extensions: 435748
Number of successful extensions: 2002
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1982
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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