Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0603
         (662 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...   293   3e-81
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...   151   1e-38
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         27   0.70 
AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine...    25   2.8  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    23   6.5  

>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score =  293 bits (719), Expect = 3e-81
 Identities = 132/186 (70%), Positives = 161/186 (86%), Gaps = 1/186 (0%)
 Frame = +1

Query: 1   ENLISPCDNCAAPYGFRNQMSLSKDTDFFEKAVAQADVSGNLDAPEGGFDAIMQAVVCRQ 180
           +NL  PC  C APYG+ N M LS D + F + V +A+VSGNLDAPEGGFDAIMQA+VCR+
Sbjct: 231 KNLREPCPGCVAPYGYHNLMPLSTDANLFSQEVQRANVSGNLDAPEGGFDAIMQAIVCRE 290

Query: 181 QIGWRDQARRLLVFSTDAGFHYAGDGKLGGIVQPNDGQCHMENNA-YTHSTLQDYPSISQ 357
           QIGWR++ARRLL+FSTDAGFHYAGDGKLGG++ PNDG+CH+++N  YTHST QDYPSISQ
Sbjct: 291 QIGWREKARRLLLFSTDAGFHYAGDGKLGGVITPNDGECHLDHNGRYTHSTTQDYPSISQ 350

Query: 358 INLKVKKNAINVIFAVTAEQISVYEELSKHIEGSSSGILSEDSDNVVDLVREQYNKITST 537
           INLKVK+NAINVI AVTAE++SVYE+LS+ +EGSS+  LS DS N+V LVR+QYNKI+S+
Sbjct: 351 INLKVKQNAINVILAVTAEELSVYEQLSRLVEGSSAAKLSNDSSNIVSLVRDQYNKISSS 410

Query: 538 VEMKDS 555
           VEMKD+
Sbjct: 411 VEMKDN 416



 Score = 37.1 bits (82), Expect = 5e-04
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +2

Query: 524 KLRQPLK*RTHRVD-AVQIVYYSSCLGGKD-LVQTNKCDGLKVGDM 655
           K+   ++ + +R D  + + YYS C      L QTN+C+GLKVGD+
Sbjct: 406 KISSSVEMKDNRTDNVIDVKYYSRCRNTNGALQQTNRCEGLKVGDV 451


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score =  151 bits (367), Expect = 1e-38
 Identities = 76/190 (40%), Positives = 116/190 (61%), Gaps = 6/190 (3%)
 Frame = +1

Query: 7   LISPC----DNCAAPYGFRNQMSLSKDTDFFEKAVAQADVSGNLDAPEGGFDAIMQAVVC 174
           L +PC    D C   YGF++++ +++D D F   V +++V+GN+D  E G DA+MQ +VC
Sbjct: 199 LQNPCYSENDQCEPTYGFKHRLKITRDIDSFIAQVKESNVTGNVDNLEAGLDALMQVLVC 258

Query: 175 RQQIGWRDQARRLLVFSTDAGFHYAGDGKLGGIVQPNDGQCHMENNA-YTHSTLQDYPSI 351
            +QIGW    R++++ +TD   H AGDG L GIV+ ND QCH++++  +  +   DYPS+
Sbjct: 259 EKQIGWGSNTRKIVIVATDGWLHMAGDGLLAGIVEENDKQCHLDSDGNFVDALKYDYPSL 318

Query: 352 SQINLKVKKNAINVIFAVTAEQISVYEELSKHI-EGSSSGILSEDSDNVVDLVREQYNKI 528
            QI   + ++   VIFAVT  Q + Y  LS  + E +S G L +DS N++ LV E Y + 
Sbjct: 319 EQIWRVLLRSKTAVIFAVTEAQQAYYRRLSDLMPEFTSVGRLQDDSSNIIQLVDEGYREF 378

Query: 529 TSTVEMKDSS 558
              VE  D+S
Sbjct: 379 VKRVEFIDNS 388


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 26.6 bits (56), Expect = 0.70
 Identities = 25/81 (30%), Positives = 37/81 (45%)
 Frame = +1

Query: 409  AEQISVYEELSKHIEGSSSGILSEDSDNVVDLVREQYNKITSTVEMKDSSSGRRSNCVLL 588
            AE + V + L    E S +G +  DSD  +D V + Y K+      K SSS  +S    L
Sbjct: 2133 AEDVEVPKALGDVFE-SIAGAIFLDSDMSLDTVWKVYRKMMGPEIEKFSSSVPKSPIREL 2191

Query: 589  IVSRRQGSRANK*M*RTQGRR 651
            +    + ++  K    T GRR
Sbjct: 2192 LEMEPETAKFGKPEKLTDGRR 2212


>AJ459779-1|CAD30839.1|  405|Anopheles gambiae clip-domain serine
           protease protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 277 QPNDGQCHMENNAYTHSTLQDYPSISQI 360
           +PN GQC +      +  + D  S+S I
Sbjct: 46  EPNPGQCMLPAECVAYGKINDVSSLSSI 73


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1
           protein.
          Length = 2051

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 457 SSSGILSEDSDNVVDLVREQYNKITSTVEMKDSSSGRRSN 576
           SSS    E+++N      EQY K    VE + + + R  N
Sbjct: 386 SSSSSSEEEAENFKISTAEQYKKQAKEVERRGNRNRRDLN 425


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 693,382
Number of Sequences: 2352
Number of extensions: 14900
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66068490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)