Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0603
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical pr... 213 1e-55
U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta p... 213 1e-55
AF106575-4|AAC78172.2| 548|Caenorhabditis elegans Hypothetical ... 31 0.55
Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF003141-12|AAP68910.1| 946|Caenorhabditis elegans Hypothetical... 29 2.2
AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical... 29 2.2
AF045635-1|AAU87830.1| 480|Caenorhabditis elegans Nuclear hormo... 28 5.1
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 27 9.0
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z54271-3|CAA91039.1| 713|Caenorhabditis elegans Hypothetical pr... 27 9.0
L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr... 27 9.0
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 27 9.0
>Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical
protein ZK1058.2 protein.
Length = 809
Score = 213 bits (519), Expect = 1e-55
Identities = 97/191 (50%), Positives = 139/191 (72%), Gaps = 4/191 (2%)
Frame = +1
Query: 1 ENLISPCDN-CAAPYGFRNQMSLSKDTDFFEKAVAQADVSGNLDAPEGGFDAIMQAVVCR 177
E +SPC CA PYGF++QMSL+ +T F+ V +A++SGNLDAPEGGFDA++QA+ C
Sbjct: 210 EKQLSPCPTPCAEPYGFKHQMSLTTNTAKFKAEVDKAEISGNLDAPEGGFDAVVQALACN 269
Query: 178 QQIGWRDQARRLLVFSTDAGFHYAGDGKLGGIVQPNDGQCHMENNAYTHSTL-QDYPSIS 354
+ IGWR++AR+++VFSTDAGFH+AGDG+L G+V+PNDG CH++ Y TL QDYPSI+
Sbjct: 270 KTIGWRERARKMIVFSTDAGFHFAGDGRLAGVVEPNDGTCHLDREGYYTETLNQDYPSIA 329
Query: 355 QINLKVKKNAINVIFAVTAEQISVYEELSKHIE--GSSSGILSEDSDNVVDLVREQYNKI 528
++ +K NVIFAVT +Y +LS + SS G+L+ DS N+VDL+ ++Y KI
Sbjct: 330 LLHQMIKDRKANVIFAVTKNNQDLYTQLSNALPDVSSSVGVLANDSRNIVDLIEKEYLKI 389
Query: 529 TSTVEMKDSSS 561
+ + M D+++
Sbjct: 390 SEKIIMVDNAN 400
Score = 35.5 bits (78), Expect = 0.034
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 563 DAVQIVYYSSCLGGKDLVQTNKCDGLKVGD 652
+ +++ Y S CL G L TN C+G++VGD
Sbjct: 403 EGLKLTYRSMCLDGTTLKDTNVCEGIRVGD 432
>U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta
pat-3 protein.
Length = 809
Score = 213 bits (519), Expect = 1e-55
Identities = 97/191 (50%), Positives = 139/191 (72%), Gaps = 4/191 (2%)
Frame = +1
Query: 1 ENLISPCDN-CAAPYGFRNQMSLSKDTDFFEKAVAQADVSGNLDAPEGGFDAIMQAVVCR 177
E +SPC CA PYGF++QMSL+ +T F+ V +A++SGNLDAPEGGFDA++QA+ C
Sbjct: 210 EKQLSPCPTPCAEPYGFKHQMSLTTNTAKFKAEVDKAEISGNLDAPEGGFDAVVQALACN 269
Query: 178 QQIGWRDQARRLLVFSTDAGFHYAGDGKLGGIVQPNDGQCHMENNAYTHSTL-QDYPSIS 354
+ IGWR++AR+++VFSTDAGFH+AGDG+L G+V+PNDG CH++ Y TL QDYPSI+
Sbjct: 270 KTIGWRERARKMIVFSTDAGFHFAGDGRLAGVVEPNDGTCHLDREGYYTETLNQDYPSIA 329
Query: 355 QINLKVKKNAINVIFAVTAEQISVYEELSKHIE--GSSSGILSEDSDNVVDLVREQYNKI 528
++ +K NVIFAVT +Y +LS + SS G+L+ DS N+VDL+ ++Y KI
Sbjct: 330 LLHQMIKDRKANVIFAVTKNNQDLYTQLSNALPDVSSSVGVLANDSRNIVDLIEKEYLKI 389
Query: 529 TSTVEMKDSSS 561
+ + M D+++
Sbjct: 390 SEKIIMVDNAN 400
Score = 35.5 bits (78), Expect = 0.034
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 563 DAVQIVYYSSCLGGKDLVQTNKCDGLKVGD 652
+ +++ Y S CL G L TN C+G++VGD
Sbjct: 403 EGLKLTYRSMCLDGTTLKDTNVCEGIRVGD 432
>AF106575-4|AAC78172.2| 548|Caenorhabditis elegans Hypothetical
protein K04F1.13 protein.
Length = 548
Score = 31.5 bits (68), Expect = 0.55
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 286 DGQCHMENNAYTHSTLQDYPSISQINLKVKKNAI-NVIFAVTAEQISVYEELSKHIEG 456
+ CH N + T ST++++PS+ V N + N +T EQ+ Y + +H+ G
Sbjct: 32 ENDCHFYNTSITSSTIKNWPSLC---TTVCGNLVFNADTDLTGEQLEPYFQKLRHLNG 86
>Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical protein
T21E8.3 protein.
Length = 1243
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = +1
Query: 289 GQCHMENNAYTHSTLQDYPSISQINLKVKKNAINVIFAVTAEQISVYEELSKHIEGSSSG 468
G+ + EN + + DY + +NLKV+ I + S L + + G
Sbjct: 1000 GEVNGENVKFHYHQRPDYTVLDSVNLKVEAGKTLAIVGPSGSGKSTIISLLEMFYRADQG 1059
Query: 469 ILSEDSDNVVDL 504
+ D+DNV ++
Sbjct: 1060 FIKIDNDNVENI 1071
>Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical protein
T21E8.3 protein.
Length = 1243
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = +1
Query: 289 GQCHMENNAYTHSTLQDYPSISQINLKVKKNAINVIFAVTAEQISVYEELSKHIEGSSSG 468
G+ + EN + + DY + +NLKV+ I + S L + + G
Sbjct: 1000 GEVNGENVKFHYHQRPDYTVLDSVNLKVEAGKTLAIVGPSGSGKSTIISLLEMFYRADQG 1059
Query: 469 ILSEDSDNVVDL 504
+ D+DNV ++
Sbjct: 1060 FIKIDNDNVENI 1071
>AF003141-12|AAP68910.1| 946|Caenorhabditis elegans Hypothetical
protein W02D3.10b protein.
Length = 946
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 382 AINVIFA--VTAEQISVYEELSKHIEGSSSGILSEDSDNVVDLVREQYNKITSTVEMKDS 555
A N++F T E + +E +S+ SSSGI + D D V + I ++ + DS
Sbjct: 219 ADNILFEWLKTTEDVDAFELISEISASSSSGITTPSIDRFCDEVIVEKIGIDTSSDDMDS 278
Query: 556 SSGRRS 573
RRS
Sbjct: 279 ERKRRS 284
>AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical
protein W02D3.10a protein.
Length = 1437
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 382 AINVIFA--VTAEQISVYEELSKHIEGSSSGILSEDSDNVVDLVREQYNKITSTVEMKDS 555
A N++F T E + +E +S+ SSSGI + D D V + I ++ + DS
Sbjct: 219 ADNILFEWLKTTEDVDAFELISEISASSSSGITTPSIDRFCDEVIVEKIGIDTSSDDMDS 278
Query: 556 SSGRRS 573
RRS
Sbjct: 279 ERKRRS 284
>AF045635-1|AAU87830.1| 480|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 76 protein.
Length = 480
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 146 NPPSGASKLPETSACATAFSKKSVSL 69
+PPS S P TS+C++A KK ++
Sbjct: 55 SPPSAISSPPSTSSCSSASEKKECAV 80
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 573 KLCITHRVSAARISCKQINVTDSRSETWVE 662
K+C+ +R + R+ + + D +ETWVE
Sbjct: 3439 KICLKYRPTDIRVFHRVLKELDEMNETWVE 3468
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 573 KLCITHRVSAARISCKQINVTDSRSETWVE 662
K+C+ +R + R+ + + D +ETWVE
Sbjct: 3450 KICLKYRPTDIRVFHRVLKELDEMNETWVE 3479
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 573 KLCITHRVSAARISCKQINVTDSRSETWVE 662
K+C+ +R + R+ + + D +ETWVE
Sbjct: 3450 KICLKYRPTDIRVFHRVLKELDEMNETWVE 3479
>Z54271-3|CAA91039.1| 713|Caenorhabditis elegans Hypothetical
protein F21D5.3 protein.
Length = 713
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 GKLGGIVQPNDGQCHMENNAYTHSTLQDYP-SISQINLKVKKNAINVIFAVTAEQISVYE 432
G +GG V P + Y H ++ P ++ ++K N +++F + ++ +
Sbjct: 252 GNVGGAV-PISAILLNDKGWYDHDIIKSQPFNLPLERFQIKPNE-DILFRIVNGGVA--Q 307
Query: 433 ELSKHIEGSSSGILSEDSDNVVDL 504
EL ++EG +++ D D VV +
Sbjct: 308 ELMLYVEGHPMTVVAADGDEVVPM 331
>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical
protein F54F2.1 protein.
Length = 1226
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Frame = +1
Query: 10 ISPCDNCAAPYGFRNQMSLSKDTDFFEKAVAQADVSGNLDAPE---GGFDAIMQAVVCRQ 180
+ P + P F+N+++++ + + V V+ D + G D M V Q
Sbjct: 624 LEPAIDTTVPLSFQNKINIANNCGKDDLCVPDLKVTAVADREKFLLGTQDNTMLINVTVQ 683
Query: 181 QIGWRDQARRLLVFSTDAGFHYAGDGKLGG 270
G D L F GF Y G +GG
Sbjct: 684 N-GGEDSYETKLYFDVPQGFEYGGIESVGG 712
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 573 KLCITHRVSAARISCKQINVTDSRSETWVE 662
K+C+ +R + R+ + + D +ETWVE
Sbjct: 3450 KICLKYRPTDIRVFHRVLKELDEMNETWVE 3479
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,300
Number of Sequences: 27780
Number of extensions: 319047
Number of successful extensions: 1172
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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