Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0603
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.   106   2e-25
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.0  

>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score =  106 bits (254), Expect = 2e-25
 Identities = 45/67 (67%), Positives = 55/67 (82%)
 Frame = +1

Query: 1   ENLISPCDNCAAPYGFRNQMSLSKDTDFFEKAVAQADVSGNLDAPEGGFDAIMQAVVCRQ 180
           ++L  PCD CAAPYG++N M+LS+DT  F   V  A VSGNLDAPEGGFDAIMQA+VCR+
Sbjct: 14  KSLKEPCDGCAAPYGYKNIMTLSQDTSHFASLVRNASVSGNLDAPEGGFDAIMQAIVCRR 73

Query: 181 QIGWRDQ 201
           QIGWR++
Sbjct: 74  QIGWREK 80


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 209 GCSSSRPTPASITPGTESSA 268
           G SSS PT +S  PG  ++A
Sbjct: 145 GLSSSAPTGSSCGPGAAAAA 164


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 312 VVFHVTLAVIRLHYTAELSVPGV 244
           +VF++TL    L YT  L +P V
Sbjct: 226 IVFNITLRRKTLFYTVNLIIPCV 248


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 660 PPMSPTLSPSHLFV 619
           PP SP L+PS  F+
Sbjct: 270 PPYSPDLAPSDYFL 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,074
Number of Sequences: 438
Number of extensions: 3911
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)