Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0603
(662 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59530.1 68418.m07460 2-oxoglutarate-dependent dioxygenase, p... 29 2.1
At5g66560.1 68418.m08391 phototropic-responsive NPH3 family prot... 29 2.8
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 29 3.6
At3g20150.1 68416.m02554 kinesin motor family protein contains P... 29 3.6
At3g05100.1 68416.m00554 expressed protein 28 4.8
At5g59540.1 68418.m07461 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 6.4
At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containi... 28 6.4
At3g07010.1 68416.m00832 pectate lyase family protein similar to... 28 6.4
At2g22610.1 68415.m02680 kinesin motor protein-related 28 6.4
At5g48900.1 68418.m06049 pectate lyase family protein similar to... 27 8.4
At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containi... 27 8.4
At3g46600.2 68416.m05059 scarecrow transcription factor family p... 27 8.4
At3g46600.1 68416.m05058 scarecrow transcription factor family p... 27 8.4
At3g24230.1 68416.m03041 pectate lyase family protein similar to... 27 8.4
At3g13222.1 68416.m01655 expressed protein 27 8.4
>At5g59530.1 68418.m07460 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967);
1-aminocyclopropane-1-carboxylate oxidase kidney bean,
PIR:T10818
Length = 364
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 185 ICWRHTTACMIASNPPSGASKLPETSACATAFSKKSVSLLSDI 57
+ WR + +C +A +PP+ +LPET A K V L D+
Sbjct: 149 LTWRDSISCYMAPDPPT-PEELPETCRDAMIEYSKHVLSLGDL 190
>At5g66560.1 68418.m08391 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 668
Score = 29.1 bits (62), Expect = 2.8
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 10/110 (9%)
Frame = +1
Query: 301 MENNAYTHSTLQDYPSISQINLKVKKNAINVIFAVTAEQISVYEELSKHI----EGSSSG 468
+E N Y H L+D+P S+ V K V ++A + ++H+ E S
Sbjct: 97 IEENGYPHIKLEDFPGSSESFEMVAKFCYGVKMDLSASTVVPLRCAAEHLEMTEEYSPDN 156
Query: 469 ILSED----SDNVVDLVREQYN--KITSTVEMKDSSSGRRSNCVLLIVSR 600
++S+ S +V +RE K +V S G C+ IVSR
Sbjct: 157 LISKTERFLSHSVYKSLRESIKALKACESVSPLAGSLGITEQCIDSIVSR 206
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 28.7 bits (61), Expect = 3.6
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Frame = -3
Query: 249 GVMEAGVGREDEQPTGLV--PPADLLAAHD-----RLHDRVEPSFGRVQVTRNVRLCDCF 91
G ++ G+ + +Q +GL P + AH R++ + SFG V V+R +R C
Sbjct: 565 GEIDPGLQTQAQQDSGLATSPTRHPVTAHQVIYELRVYSLQKESFGSVLVSRAIRAAHCL 624
Query: 90 FK-EVSILTERHLIAETVRRGAVV 22
+ S +E L+A R G+++
Sbjct: 625 TSIQFSPTSEHILLAYGRRHGSLL 648
>At3g20150.1 68416.m02554 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1114
Score = 28.7 bits (61), Expect = 3.6
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Frame = +1
Query: 292 QCHMENNAYTHSTLQDYPSISQINLKVKKNAINVIFA--VTAEQISVYEEL--------- 438
QC + + D +Q NLK+K +A N I+ +T E + YE++
Sbjct: 231 QCRCSFLEIYNGQISDLIDQTQRNLKIKDDAKNGIYVENLTEEYVDSYEDVAQILMKGLS 290
Query: 439 SKHIEGSSSGILSEDSDNVVDLVREQYNKITST 537
S+ + +S+ S S ++ + E +NK S+
Sbjct: 291 SRKVGATSTSFQSSRSHVILSFIVESWNKGASS 323
>At3g05100.1 68416.m00554 expressed protein
Length = 336
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 168 DRLHDRVEPSFGRVQVTRNVRLC 100
+RL DR++P GR+ V+ NV+ C
Sbjct: 270 ERLVDRLKPYDGRIFVSHNVKFC 292
>At5g59540.1 68418.m07461 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to
desacetoxyvindoline-4-hydroxylase [Catharanthus roseus]
GI:2352812; contains Pfam profile PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 366
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 179 WRHTTACMIASNPPSGASKLPETSACATAFSKKSVSLLS 63
WR + +C IA +PP+ ++PET C A + S +LS
Sbjct: 153 WRDSFSCYIAPDPPA-PEEIPET--CRDAMFEYSKHVLS 188
>At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1229
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = -3
Query: 222 EDEQPTGLVPPADLLA---AHDRLHDRVEPSFGRVQVTRNVRLC-DCFF--KEVSILTER 61
E+++ T L ++ LA A + E S +++T+N+R+C DC K +S +T R
Sbjct: 603 EEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSR 662
Query: 60 HLIAETVRR 34
+I R
Sbjct: 663 EIIIRDTNR 671
>At3g07010.1 68416.m00832 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa]
Length = 416
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 184 IGWRDQARRLLVFSTDAGFHYAGDGKLGGIVQPNDGQCHMENNAYTH 324
+G D R V +++ G+G + + + G H+ NN YTH
Sbjct: 266 LGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTH 312
>At2g22610.1 68415.m02680 kinesin motor protein-related
Length = 1093
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +3
Query: 342 PQYFTDQPESEKKCYKRDIRGNSRTDQRVRRVEQTHRGVQQRHPQ*GLRQRCRSR 506
P+ P K C+K D GN + + ++R +RH L + R +
Sbjct: 961 PEVANATPNEVKTCFKEDNFGNENMESNTNILRTSNRLKTKRHDSLNLNEMTRKK 1015
>At5g48900.1 68418.m06049 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa];
non-consensus AG donor splice site at exon 2
Length = 417
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 184 IGWRDQARRLLVFSTDAGFHYAGDGKLGGIVQPNDGQCHMENNAYTH 324
+G D R V +++ G+G + + + G H+ NN YTH
Sbjct: 267 LGHSDTYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTH 313
>At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 657
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -3
Query: 129 VQVTRNVRLC-DC--FFKEVSILTERHLIAETVRR 34
+++T+N+RLC DC F K +S E+ ++ V R
Sbjct: 608 IRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNR 642
>At3g46600.2 68416.m05059 scarecrow transcription factor family
protein scarecrow-like 11 - Arabidopsis thaliana,
EMBL:AF036307
Length = 453
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +1
Query: 343 PSISQINLKVKKNAINVIFAVTAEQISVYEELSKHIEGSSSGILSEDSDNVVDL 504
P+IS ++ +K ++ +Q E+ ++H++GSS+ + SD VD+
Sbjct: 26 PAISTVDELAEKFEEVLLVCQKNDQGEATEKKTRHVKGSSNRYKQQKSDQPVDM 79
>At3g46600.1 68416.m05058 scarecrow transcription factor family
protein scarecrow-like 11 - Arabidopsis thaliana,
EMBL:AF036307
Length = 583
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +1
Query: 343 PSISQINLKVKKNAINVIFAVTAEQISVYEELSKHIEGSSSGILSEDSDNVVDL 504
P+IS ++ +K ++ +Q E+ ++H++GSS+ + SD VD+
Sbjct: 156 PAISTVDELAEKFEEVLLVCQKNDQGEATEKKTRHVKGSSNRYKQQKSDQPVDM 209
>At3g24230.1 68416.m03041 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa]
Length = 452
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 184 IGWRDQARRLLVFSTDAGFHYAGDGKLGGIVQPNDGQCHMENNAYTH 324
+G D R + +++ G+G + + + G H+ NN YTH
Sbjct: 302 LGHNDSYTRDKMMQVTVAYNHFGEGLIQRMPRCRHGYFHVVNNDYTH 348
>At3g13222.1 68416.m01655 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/70 (22%), Positives = 30/70 (42%)
Frame = +2
Query: 419 SACTKS*ANTSRGPAAASSVRTPTTLSISYGSNTIKLRQPLK*RTHRVDAVQIVYYSSCL 598
S S N +R SS+ P +S+ G + K++ + +VD + +
Sbjct: 119 SGTASSAPNNARNDTKPSSIMAPNPISLPSGISNQKIQDAIISPVDKVDTEEQPLSKATS 178
Query: 599 GGKDLVQTNK 628
KD+V+ +K
Sbjct: 179 SSKDVVEPDK 188
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,314,077
Number of Sequences: 28952
Number of extensions: 296564
Number of successful extensions: 999
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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