Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0602
         (755 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.5  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 577 ITISAIYQFLI**KKFHRKEITLFYNSI 660
           +T+S IYQF++    F+R+    + NSI
Sbjct: 161 LTLSEIYQFIMDLFPFYRQNQQRWQNSI 188


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 262 INMNSLSGAMSISCLRLLTRRNVNSFVESISRTTFLAFSVS 140
           +NM  +   ++ + LRLLTR  +   V S+S+   L  S S
Sbjct: 355 LNMVEVRSPVTPADLRLLTRGRLVLTVSSVSKPEALRLSGS 395


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,749
Number of Sequences: 336
Number of extensions: 3664
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)