Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0602
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    31   0.23 
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    27   3.8  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   6.7  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    26   6.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   6.7  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.8  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   8.8  

>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 235 MSISC-LRLL-TRRNVNSFVESISRTTFLAFSVSCPISPAYNTEVA 104
           +SISC +RLL T+ +    VE I  T   A +V C  +P  NTE A
Sbjct: 154 ISISCKIRLLETKEDTLKLVERICDTGVRAITVHCRTTPMRNTEPA 199


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 217 RLLTRRNVNSFVESISRTTFLAFSVSCPISPAYNTEVALSNELLI 83
           RL+T   ++ F+ ++  +TF  F ++CP    Y    AL N+ +I
Sbjct: 47  RLITVEKIDVFINAMVPSTFALFCMACPYL-LYTAVDALLNKDVI 90


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -2

Query: 265 TINMNSLSGAMSISCL----RLLTRRNVNSFVESISRTTFLAFSVSCPISPAYNTE 110
           T+ +N  S  MS+  +    R L RR ++ +   +S+TT ++  V CP+ PA   E
Sbjct: 569 TLYLNCNSKPMSLGSMFEHYRKLARRLISHY---LSKTTLISLLVGCPV-PAIPAE 620


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 344 FSEHYLLYTGTILEPPMVIFLALRNKFSVV--DFFHW 448
           ++  Y+  +GT+ + P +I LA+RN  S    + F+W
Sbjct: 344 YTASYVANSGTLYDYPTLIRLAIRNTLSPSKDEIFNW 380


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = +2

Query: 266  YTEHIGLNLYLQKTVG*FIIKIILYCFSEHYLLYTGTILEPPMVIFLALRNKFSVVDFF 442
            Y+ + G ++YL   +   ++   +  ++ HY+ +  T+    +  F+   ++FS VDFF
Sbjct: 1412 YSLYTGSSIYLGSRLIMMLLFGTMTVWTTHYVYFWVTMFALVICPFIYNPHQFSFVDFF 1470


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 430 GRFFSLVAVIGHKFFNGN*FITVYLEDQ*LMIKLMALNAFQTNVILVL 573
           G F +L A+I   F   + F++ +LED+ +M+  + L      + LVL
Sbjct: 351 GNFIALSALIVAPFILASSFLSRWLEDRHIMLGGLFLGILAVAIHLVL 398


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 320 IIKIILYCFSEHYLLYTGTILEPPMVIFLALRNK 421
           +I  +L   SE+Y+LY   I  P +VI   +R+K
Sbjct: 554 LIDQLLELLSEYYVLYATDISFPELVIPAIVRSK 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,196
Number of Sequences: 5004
Number of extensions: 60614
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)