Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0602
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44387| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)             107   1e-23
SB_48945| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)             107   1e-23
SB_53948| Best HMM Match : Robl_LC7 (HMM E-Value=9.3e-25)             101   5e-22
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   8e-21
SB_47827| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_13938| Best HMM Match : Robl_LC7 (HMM E-Value=2.5e-17)              77   2e-14
SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   3e-12
SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)                31   1.3  
SB_57360| Best HMM Match : Peptidase_A17 (HMM E-Value=8.9e-29)         30   2.3  

>SB_44387| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)
          Length = 160

 Score =  107 bits (256), Expect = 1e-23
 Identities = 48/90 (53%), Positives = 71/90 (78%)
 Frame = +3

Query: 6   VEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVREMDST 185
           VE  +KRIQ+HKGV+G ++VN EG PI+S LDN+T++LYA     L + AR+ VR++D  
Sbjct: 68  VENILKRIQSHKGVIGSIVVNSEGTPIRSDLDNSTTLLYASNCHHLAKLARSTVRDIDPQ 127

Query: 186 NELTFLRVRSRRHEILIAPDREFILIVIQN 275
           N+L+ LRV+SR++EI+IAP  E++LIV+Q+
Sbjct: 128 NDLSILRVKSRKYEIIIAPYEEYMLIVVQS 157


>SB_48945| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)
          Length = 101

 Score =  107 bits (256), Expect = 1e-23
 Identities = 48/90 (53%), Positives = 71/90 (78%)
 Frame = +3

Query: 6   VEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVREMDST 185
           VE  +KRIQ+HKGV+G ++VN EG PI+S LDN+T++LYA     L + AR+ VR++D  
Sbjct: 9   VENILKRIQSHKGVIGSIVVNSEGTPIRSDLDNSTTLLYASNCHHLAKLARSTVRDIDPQ 68

Query: 186 NELTFLRVRSRRHEILIAPDREFILIVIQN 275
           N+L+ LRV+SR++EI+IAP  E++LIV+Q+
Sbjct: 69  NDLSILRVKSRKYEIIIAPYEEYMLIVVQS 98


>SB_53948| Best HMM Match : Robl_LC7 (HMM E-Value=9.3e-25)
          Length = 101

 Score =  101 bits (243), Expect = 5e-22
 Identities = 45/90 (50%), Positives = 68/90 (75%)
 Frame = +3

Query: 6   VEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVREMDST 185
           VEE +KRI  H GV G +I N EG+ I+S++DN+T+ +Y   I  +T+ AR+ VR++D  
Sbjct: 7   VEEVLKRIINHPGVTGSIITNPEGVAIRSTMDNSTTQIYLSNIQSMTQMARSAVRDLDPL 66

Query: 186 NELTFLRVRSRRHEILIAPDREFILIVIQN 275
           N+L FLR+RSR++EIL+AP+ ++ LIVIQ+
Sbjct: 67  NDLKFLRIRSRKYEILVAPENDYTLIVIQS 96


>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 97.9 bits (233), Expect = 8e-21
 Identities = 45/89 (50%), Positives = 63/89 (70%)
 Frame = +3

Query: 6   VEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVREMDST 185
           VE T++RI  H GVMG +++N++G PIKSS+D  T+ LYA     L   A + VR+MD  
Sbjct: 112 VENTLQRISLHPGVMGWLVINNQGEPIKSSMDIPTTQLYASEFAPLAHFAHSAVRDMDPQ 171

Query: 186 NELTFLRVRSRRHEILIAPDREFILIVIQ 272
           NEL F+RVR+ + E ++APD E++LIVIQ
Sbjct: 172 NELRFIRVRTNKMEFMVAPDNEYLLIVIQ 200


>SB_47827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 37/95 (38%), Positives = 63/95 (66%), Gaps = 4/95 (4%)
 Frame = +3

Query: 3   RVEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVREMDS 182
           +VE  ++RIQ+HKGV+G  ++N EG  +++S+D  T+  YA +   L   AR  VR++D 
Sbjct: 4   QVERRLERIQSHKGVLGSAVINPEGKVLRTSMDTTTTNQYANMCKNLASMARGTVRDVDP 63

Query: 183 TNELTFLRVRSRRHEILIAPDR----EFILIVIQN 275
            ++L  LRVR++ HE++IAP+R     F ++ +Q+
Sbjct: 64  ADDLLILRVRTKEHEVIIAPERTGDGTFFIVALQS 98


>SB_13938| Best HMM Match : Robl_LC7 (HMM E-Value=2.5e-17)
          Length = 111

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 35/89 (39%), Positives = 56/89 (62%)
 Frame = +3

Query: 12  ETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVREMDSTNE 191
           + I RI+ H  V GV+++N +G+ + +SLD   +  Y      L E AR  +R+ D  ++
Sbjct: 14  DRIHRIEGHTNVSGVLVINTKGLILHTSLDTTQTTAYTQQCVPLVELARATIRDTDPEDD 73

Query: 192 LTFLRVRSRRHEILIAPDREFILIVIQNT 278
           L F RVR+ +HE++IAP+ ++ LIVIQ T
Sbjct: 74  LRFFRVRTLKHELIIAPEDKYTLIVIQKT 102


>SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 31/67 (46%), Positives = 48/67 (71%)
 Frame = +3

Query: 6   VEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVREMDST 185
           VE+ + RIQ  KGV G++IVN +G+PI+S+LDN++++ Y  +   +   AR+VVR+ D T
Sbjct: 265 VEQILDRIQQQKGVTGLIIVNQDGMPIRSTLDNSSTLQYVNMCKTMCGIARSVVRDTDPT 324

Query: 186 NELTFLR 206
           N+L  LR
Sbjct: 325 NDLKILR 331


>SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)
          Length = 657

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
 Frame = +3

Query: 3   RVEETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGL--IGQLTEKARNVVREM 176
           ++EE I ++Q  K     ++++ +G   K  ++   + L        QL E+   + RE+
Sbjct: 118 KLEEMIAKLQKEKREEQTLVMDGKGF--KQDIERMKNELETERKRTSQLVEERDEMAREL 175

Query: 177 DSTN-ELTFLRVRSRRHEILIAPDREFILIVIQNTSD*IFTYKKQ 308
           D+   EL + +  +         D   + + +++T D +FTY+K+
Sbjct: 176 DNAKKELQYHKQTTEECATADDDDYAMLKLKLKSTKDELFTYQKR 220


>SB_57360| Best HMM Match : Peptidase_A17 (HMM E-Value=8.9e-29)
          Length = 1354

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 21  KRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVREM 176
           KR+   + V  VVIV+ EGI  ++ LD  +   YA        K R V RE+
Sbjct: 37  KRVPVGRVVYPVVIVDVEGIKCRALLDTGSGSSYASAALLDRLKKRQVTREV 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,006,070
Number of Sequences: 59808
Number of extensions: 389712
Number of successful extensions: 766
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)