Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0602
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54216-5|CAA90946.1|   95|Caenorhabditis elegans Hypothetical pr...    95   6e-20
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    29   3.6  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    29   3.6  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    29   3.6  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    29   3.6  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    29   3.6  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    29   3.6  
Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AC006627-7|AAK85463.1|  218|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z54216-5|CAA90946.1|   95|Caenorhabditis elegans Hypothetical
           protein T24H10.6 protein.
          Length = 95

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 39/91 (42%), Positives = 71/91 (78%)
 Frame = +3

Query: 9   EETIKRIQAHKGVMGVVIVNHEGIPIKSSLDNATSVLYAGLIGQLTEKARNVVREMDSTN 188
           EETI+R+Q+ KGV+G+++V+  G  I S++D+  +  +   + QL EK +  +RE+DS+N
Sbjct: 5   EETIRRLQSEKGVVGIIVVDSAGRVIHSTIDSDATQSHTAFLQQLCEKTKTSIRELDSSN 64

Query: 189 ELTFLRVRSRRHEILIAPDREFILIVIQNTS 281
           +LTFLR+R++++EI+IAPD++ +++VI++ S
Sbjct: 65  DLTFLRLRTKKNEIMIAPDKDHVIMVIKDLS 95


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 277 HRIKSLLTKNSRLIYN*NYFILFFRTLFIIY 369
           +RI+ LL ++S+ + N   F +FF TL+ I+
Sbjct: 183 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 213


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 277 HRIKSLLTKNSRLIYN*NYFILFFRTLFIIY 369
           +RI+ LL ++S+ + N   F +FF TL+ I+
Sbjct: 183 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 213


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 277 HRIKSLLTKNSRLIYN*NYFILFFRTLFIIY 369
           +RI+ LL ++S+ + N   F +FF TL+ I+
Sbjct: 241 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 271


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 277 HRIKSLLTKNSRLIYN*NYFILFFRTLFIIY 369
           +RI+ LL ++S+ + N   F +FF TL+ I+
Sbjct: 241 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 271


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 277 HRIKSLLTKNSRLIYN*NYFILFFRTLFIIY 369
           +RI+ LL ++S+ + N   F +FF TL+ I+
Sbjct: 241 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 271


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 277 HRIKSLLTKNSRLIYN*NYFILFFRTLFIIY 369
           +RI+ LL ++S+ + N   F +FF TL+ I+
Sbjct: 213 NRIEQLLKRSSQQVKNVTLFFVFFMTLYAIF 243


>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 70  WFTMTTPITPLWAWILLIVSST 5
           W T+  P TP WA ++ I+ ST
Sbjct: 70  WKTLAVPGTPSWALLVCIIEST 91


>AC006627-7|AAK85463.1|  218|Caenorhabditis elegans Hypothetical
           protein E01A2.6 protein.
          Length = 218

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 8   RRNDQEDPSPQRGDGCRHRKPRRY 79
           R ND +D   QRGDGC     + Y
Sbjct: 100 RSNDFDDDGDQRGDGCSSNYSKAY 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,615,807
Number of Sequences: 27780
Number of extensions: 325052
Number of successful extensions: 634
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)