Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0602
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical ...    28   7.7  
At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical ...    28   7.7  
At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical ...    28   7.7  
At2g21530.1 68415.m02562 forkhead-associated domain-containing p...    28   7.7  
At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondr...    23   8.0  

>At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 453

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -3

Query: 528 FNHQLLIF*INSYKLISIKKLMTYNRYQ*KKSTTLNLFLRARKITIGGSRIVPVYN 361
           F   L  F   + ++++IK + + N+Y+      +++  R  +  +GGSR V + N
Sbjct: 112 FGQVLECFDNKNKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQIRN 167


>At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 467

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -3

Query: 528 FNHQLLIF*INSYKLISIKKLMTYNRYQ*KKSTTLNLFLRARKITIGGSRIVPVYN 361
           F   L  F   + ++++IK + + N+Y+      +++  R  +  +GGSR V + N
Sbjct: 126 FGQVLECFDNKNKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQIRN 181


>At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 467

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = -3

Query: 528 FNHQLLIF*INSYKLISIKKLMTYNRYQ*KKSTTLNLFLRARKITIGGSRIVPVYN 361
           F   L  F   + ++++IK + + N+Y+      +++  R  +  +GGSR V + N
Sbjct: 126 FGQVLECFDNKNKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQIRN 181


>At2g21530.1 68415.m02562 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 209

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = -2

Query: 283 SDVFCI--TINMNSLSGAMSISCLR 215
           S +FC     N N+L+GA+S++CLR
Sbjct: 21  SSLFCFYGNSNRNNLNGAVSVNCLR 45


>At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondrial
           (RPOMT) identical to SP|P92969 DNA-directed RNA
           polymerase, mitochondrial precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 976

 Score = 23.0 bits (47), Expect(2) = 8.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 27  IQAHKGVMGVVIVNHEGIPIKSSLDNATSV 116
           I  HK +MG+++ N EG+ I   ++ AT +
Sbjct: 219 ITMHK-MMGLLMTNAEGVGIVKLVNAATQI 247



 Score = 23.0 bits (47), Expect(2) = 8.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 129 LIGQLTEKARNVVREMDSTNELTFLRVRSRRHE 227
           ++ + TEKAR  V  +   N+L  ++   R+H+
Sbjct: 285 IVAKETEKARKQVTVLMEKNKLRQVKALVRKHD 317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,304,029
Number of Sequences: 28952
Number of extensions: 286345
Number of successful extensions: 604
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)