Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0601
(363 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 26 1.6
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 2.7
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 3.6
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 25 3.6
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 25 3.6
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 3.6
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 25 4.8
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 24 8.3
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 24 8.3
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 24 8.3
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 24 8.3
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 1.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 223 RYGREEDEVMGLNFYKELFLASKQIYPAPE 312
R +ED V GL + + L +++YP PE
Sbjct: 123 RQYEDEDMVNGLQYARRLRTQFERVYPVPE 152
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 2.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 88 KLTLYVAKRDFVDHITTVEPIDGVVLL 168
KLT + RD+ HI T IDGV+ L
Sbjct: 611 KLTFMIGTRDYALHIDT-GSIDGVITL 636
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 952
Score = 25.0 bits (52), Expect = 3.6
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Frame = +1
Query: 238 EDEVMGLNFYKELFLASKQI-----YPAPEKRSYELTRT--QERLMKK 360
E ++ L YKE+FL KQI P +S + R+ QE+LM++
Sbjct: 866 EKVILELEAYKEIFLEEKQIPCEEFMPGKNAKSEKSLRSVFQEQLMRE 913
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 3.6
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = -1
Query: 243 ILLAPVAKRAHHLTEHLAPADVLLVQQHHAVDRLHRRDVVHEVPLG 106
++ ++ LTE L D + H +D+ R ++HE G
Sbjct: 262 VIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTG 307
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 3.6
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +1
Query: 166 LDEEYVRGRKVFGQVVCTFRYGREEDEVMGLN-----FYKELF 279
L+E+ + K+ G +C YG ED+ M N F KELF
Sbjct: 574 LEEQSLYNFKIPGFPLCILEYGIVEDQSMKSNPDLNSFSKELF 616
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 3.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 213 HHLTEHLAPADVLLVQQHHAVDRLHRRDVVHEVPLGDV 100
+H EHL+ + Q HH R VV E PL V
Sbjct: 188 YHAVEHLSLEAREVFQLHHPPSPKQTRRVVSEGPLNGV 225
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 24.6 bits (51), Expect = 4.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 349 VAPACESVHRIASRGPGRSVW 287
V PACE + + S G+S+W
Sbjct: 364 VIPACERLTVLLSSARGKSIW 384
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 23.8 bits (49), Expect = 8.3
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 76 APNGKLTLYVAKRDFVDHITTVEPIDGVVLLDEEYVRGRKVFGQVVCTFR 225
AP G+L + D + TV+P D V ++ + G K G TFR
Sbjct: 213 APPGQLPRSIDILLDDDLVDTVKPGDRVNIVGQYRSMGSKTSGNTSATFR 262
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 23.8 bits (49), Expect = 8.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 55 FKVFKKCAPNGKLTLYVAKRDFVDHITTV 141
F + +K PNG+L L R + + T+
Sbjct: 165 FSLMEKVKPNGRLVLSTISRTLLARLLTI 193
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 23.8 bits (49), Expect = 8.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 259 NFYKELFLASKQIYPAPEKRSYELTRTQE 345
N + E L+ + EKR + LTR +E
Sbjct: 1837 NLHTESSLSLASVMSGKEKRDFSLTRVEE 1865
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 23.8 bits (49), Expect = 8.3
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Frame = -1
Query: 273 LLVEVEPHHLIL---LAPVAKRA 214
L ++VEPHH+IL AP +K A
Sbjct: 153 LFLDVEPHHVILDMCAAPGSKTA 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,131,949
Number of Sequences: 5004
Number of extensions: 17850
Number of successful extensions: 58
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -